miRNA display CGI


Results 1 - 20 of 207 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10699 5' -62.9 NC_002794.1 + 193295 1.07 0.001104
Target:  5'- gUAGUCGCCGUCCGCUCCGCGCCGCACg -3'
miRNA:   3'- -AUCAGCGGCAGGCGAGGCGCGGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 186386 0.79 0.121171
Target:  5'- -cGUCGCCGcagCCGCagCCGCgGCCGCACc -3'
miRNA:   3'- auCAGCGGCa--GGCGa-GGCG-CGGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 194853 0.78 0.130444
Target:  5'- cAGcCGCacCGUCUGC-CCGCGCCGCGCg -3'
miRNA:   3'- aUCaGCG--GCAGGCGaGGCGCGGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 90752 0.78 0.136986
Target:  5'- cGGUCGUCGUCCGUggccaUCGCGCCGCuGCu -3'
miRNA:   3'- aUCAGCGGCAGGCGa----GGCGCGGCG-UG- -5'
10699 5' -62.9 NC_002794.1 + 121238 0.78 0.143827
Target:  5'- cAGUCGCCGcugCCGCcgCCGcCGCCGCGg -3'
miRNA:   3'- aUCAGCGGCa--GGCGa-GGC-GCGGCGUg -5'
10699 5' -62.9 NC_002794.1 + 82932 0.77 0.154676
Target:  5'- -cGUCGCCGcUCCGaCUCCaggccCGCCGCGCa -3'
miRNA:   3'- auCAGCGGC-AGGC-GAGGc----GCGGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 65732 0.76 0.178618
Target:  5'- cAGUUGCCGUCCggccuccgacgGCcCCGCGCCGC-Cg -3'
miRNA:   3'- aUCAGCGGCAGG-----------CGaGGCGCGGCGuG- -5'
10699 5' -62.9 NC_002794.1 + 99397 0.76 0.178618
Target:  5'- gUGG-CGCCGUCCGC-CCGCccGCCGuCGCa -3'
miRNA:   3'- -AUCaGCGGCAGGCGaGGCG--CGGC-GUG- -5'
10699 5' -62.9 NC_002794.1 + 90389 0.76 0.182915
Target:  5'- --cUCGCCGUCCGCgaUCGgGCUGCACg -3'
miRNA:   3'- aucAGCGGCAGGCGa-GGCgCGGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 127185 0.76 0.182915
Target:  5'- cAGUCGUCG-CCGCggCCGCaGCCGCAg -3'
miRNA:   3'- aUCAGCGGCaGGCGa-GGCG-CGGCGUg -5'
10699 5' -62.9 NC_002794.1 + 56570 0.76 0.187303
Target:  5'- -cGcCGCCGaCCGC-CCGCGCCGCGg -3'
miRNA:   3'- auCaGCGGCaGGCGaGGCGCGGCGUg -5'
10699 5' -62.9 NC_002794.1 + 61825 0.75 0.199617
Target:  5'- cGGcCGCCGgcggccggcgucacUCCGCUCCGCGCCcCAUg -3'
miRNA:   3'- aUCaGCGGC--------------AGGCGAGGCGCGGcGUG- -5'
10699 5' -62.9 NC_002794.1 + 124263 0.75 0.201028
Target:  5'- gUAGUCGCCGgCCaGCcgCCGCGCCGUcCg -3'
miRNA:   3'- -AUCAGCGGCaGG-CGa-GGCGCGGCGuG- -5'
10699 5' -62.9 NC_002794.1 + 55007 0.75 0.205794
Target:  5'- --cUCGCCGggcgUCCGCcgCCGCGCCGcCGCg -3'
miRNA:   3'- aucAGCGGC----AGGCGa-GGCGCGGC-GUG- -5'
10699 5' -62.9 NC_002794.1 + 58864 0.74 0.231107
Target:  5'- -cGUCGCCGaccggcagCCGUg-CGCGCCGCGCa -3'
miRNA:   3'- auCAGCGGCa-------GGCGagGCGCGGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 81561 0.74 0.236475
Target:  5'- -cGcCGCCG-CCGCcgCCGCGCCGgACg -3'
miRNA:   3'- auCaGCGGCaGGCGa-GGCGCGGCgUG- -5'
10699 5' -62.9 NC_002794.1 + 188331 0.74 0.241947
Target:  5'- -cGUCGCCG-CCGCcggCgGCGCCGuCGCg -3'
miRNA:   3'- auCAGCGGCaGGCGa--GgCGCGGC-GUG- -5'
10699 5' -62.9 NC_002794.1 + 145368 0.73 0.264894
Target:  5'- gUGGUCaCCGggcggagacgcUCCGCUCgguggCGCGCCGCGCg -3'
miRNA:   3'- -AUCAGcGGC-----------AGGCGAG-----GCGCGGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 34324 0.73 0.264894
Target:  5'- gGGagGCCGUCCGCaaggcgacggCCGCGCCGUu- -3'
miRNA:   3'- aUCagCGGCAGGCGa---------GGCGCGGCGug -5'
10699 5' -62.9 NC_002794.1 + 19307 0.73 0.264894
Target:  5'- -cGUCGCUGaCCGC-CCaCGCCGCGCu -3'
miRNA:   3'- auCAGCGGCaGGCGaGGcGCGGCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.