miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10699 5' -62.9 NC_002794.1 + 11819 0.71 0.382021
Target:  5'- -cGUCGCCGccUUCGCUCCcccccuCGCCGCGa -3'
miRNA:   3'- auCAGCGGC--AGGCGAGGc-----GCGGCGUg -5'
10699 5' -62.9 NC_002794.1 + 12175 0.69 0.44791
Target:  5'- -cGUCGCCG-CCGaCgccgCCGCGgCCGgGCg -3'
miRNA:   3'- auCAGCGGCaGGC-Ga---GGCGC-GGCgUG- -5'
10699 5' -62.9 NC_002794.1 + 12240 0.68 0.547701
Target:  5'- cGG-CGCCGUCCGCg--GCGCCGauccggaACg -3'
miRNA:   3'- aUCaGCGGCAGGCGaggCGCGGCg------UG- -5'
10699 5' -62.9 NC_002794.1 + 12744 0.66 0.624415
Target:  5'- cGGUCcgcuaccaggaGCUG-CCGCUcuugCCGcCGCCGCGCu -3'
miRNA:   3'- aUCAG-----------CGGCaGGCGA----GGC-GCGGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 13147 0.72 0.337027
Target:  5'- gGGUCGUCG-CCGUcCCaUGCCGCACa -3'
miRNA:   3'- aUCAGCGGCaGGCGaGGcGCGGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 13859 0.68 0.527996
Target:  5'- -cGUCGCCG-CCGCcgcgacccgguucUCCgaGCGCCGCc- -3'
miRNA:   3'- auCAGCGGCaGGCG-------------AGG--CGCGGCGug -5'
10699 5' -62.9 NC_002794.1 + 14486 0.66 0.643768
Target:  5'- --cUCGCUGUUCGCggcggcggcCCGCGCuCGCGg -3'
miRNA:   3'- aucAGCGGCAGGCGa--------GGCGCG-GCGUg -5'
10699 5' -62.9 NC_002794.1 + 16554 0.66 0.67272
Target:  5'- -cGUCGCCa-CCGCcaccgCCGCcGCCGcCACc -3'
miRNA:   3'- auCAGCGGcaGGCGa----GGCG-CGGC-GUG- -5'
10699 5' -62.9 NC_002794.1 + 16587 0.66 0.67272
Target:  5'- -cGcCGCCG-CCGuCUCCGgCGUCGcCACc -3'
miRNA:   3'- auCaGCGGCaGGC-GAGGC-GCGGC-GUG- -5'
10699 5' -62.9 NC_002794.1 + 16713 0.7 0.422452
Target:  5'- --cUCGCCGUCCGaggagUCUGCGCCGg-- -3'
miRNA:   3'- aucAGCGGCAGGCg----AGGCGCGGCgug -5'
10699 5' -62.9 NC_002794.1 + 17465 0.67 0.58582
Target:  5'- aGGUCGaagGUUCGCUCCacaCGCCGCGu -3'
miRNA:   3'- aUCAGCgg-CAGGCGAGGc--GCGGCGUg -5'
10699 5' -62.9 NC_002794.1 + 19307 0.73 0.264894
Target:  5'- -cGUCGCUGaCCGC-CCaCGCCGCGCu -3'
miRNA:   3'- auCAGCGGCaGGCGaGGcGCGGCGUG- -5'
10699 5' -62.9 NC_002794.1 + 19511 0.71 0.382021
Target:  5'- aGGUCGCg--CCGCUCggaGCGCCgGCGCg -3'
miRNA:   3'- aUCAGCGgcaGGCGAGg--CGCGG-CGUG- -5'
10699 5' -62.9 NC_002794.1 + 19798 0.67 0.576232
Target:  5'- ---aCGCUGcUCCGCUCggaccgCGCGCCGgACu -3'
miRNA:   3'- aucaGCGGC-AGGCGAG------GCGCGGCgUG- -5'
10699 5' -62.9 NC_002794.1 + 19887 0.69 0.474197
Target:  5'- -cGUgGCCGaCCGCUgCCGCGa-GCACg -3'
miRNA:   3'- auCAgCGGCaGGCGA-GGCGCggCGUG- -5'
10699 5' -62.9 NC_002794.1 + 21955 0.69 0.456584
Target:  5'- aGGcCGUCGgCCGCUCC-CGCgGCGCc -3'
miRNA:   3'- aUCaGCGGCaGGCGAGGcGCGgCGUG- -5'
10699 5' -62.9 NC_002794.1 + 24042 0.66 0.653436
Target:  5'- cGGUCccuccCCGUCCGC-CCGCcCCGgACc -3'
miRNA:   3'- aUCAGc----GGCAGGCGaGGCGcGGCgUG- -5'
10699 5' -62.9 NC_002794.1 + 26621 0.66 0.634092
Target:  5'- -cGUCccccaCCGUCCGCgUCCGCGCaccCGgACg -3'
miRNA:   3'- auCAGc----GGCAGGCG-AGGCGCG---GCgUG- -5'
10699 5' -62.9 NC_002794.1 + 31325 0.67 0.576232
Target:  5'- gAGUC-UCGUCgGCUCgGCGCC-CGCc -3'
miRNA:   3'- aUCAGcGGCAGgCGAGgCGCGGcGUG- -5'
10699 5' -62.9 NC_002794.1 + 31387 0.68 0.510398
Target:  5'- -cGUCGUCGgcggccccgCCGCgCC-CGCCGCGCc -3'
miRNA:   3'- auCAGCGGCa--------GGCGaGGcGCGGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.