miRNA display CGI


Results 41 - 60 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 127811 0.66 0.636367
Target:  5'- aCGCCg--AGCgAGCGCCcgucgucGGCCCGaGCCg -3'
miRNA:   3'- -GCGGaggUCG-UCGUGG-------UCGGGCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 12042 0.66 0.627699
Target:  5'- gCGCCUUCcccuGcCGGUAUCucuGGgCCGCGCCg -3'
miRNA:   3'- -GCGGAGGu---C-GUCGUGG---UCgGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 56083 0.66 0.627699
Target:  5'- gGCCagcaggCCGcGCAGCACguGCgugCUGCGCUg -3'
miRNA:   3'- gCGGa-----GGU-CGUCGUGguCG---GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 118636 0.66 0.627699
Target:  5'- uGCUgcgCCAGCucGGCgGCCAGCUCGU-CCg -3'
miRNA:   3'- gCGGa--GGUCG--UCG-UGGUCGGGCGcGG- -5'
10700 3' -63.4 NC_002794.1 + 114261 0.66 0.627699
Target:  5'- gCGUCUCCGggggcgggucguGCuGCACCAGCCguuCGCUc -3'
miRNA:   3'- -GCGGAGGU------------CGuCGUGGUCGGgc-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 129242 0.66 0.627699
Target:  5'- gCGgCUCCGGCGGacuCgGGUCgaGCGCCu -3'
miRNA:   3'- -GCgGAGGUCGUCgu-GgUCGGg-CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 133381 0.66 0.627699
Target:  5'- uCGUCgUCCGGCGGUcaugAUCGGCCCGgGg- -3'
miRNA:   3'- -GCGG-AGGUCGUCG----UGGUCGGGCgCgg -5'
10700 3' -63.4 NC_002794.1 + 71299 0.66 0.627699
Target:  5'- aGCCgCCGGC-GCGCUcgggcGGCgagCGCGCCa -3'
miRNA:   3'- gCGGaGGUCGuCGUGG-----UCGg--GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 67343 0.66 0.627699
Target:  5'- uGCC-CCGGCGccGCcCCAcGCCgcacaGCGCCa -3'
miRNA:   3'- gCGGaGGUCGU--CGuGGU-CGGg----CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 193050 0.66 0.627699
Target:  5'- uCGCa--CAGCGcccGCACCGGCUgCGgGCCg -3'
miRNA:   3'- -GCGgagGUCGU---CGUGGUCGG-GCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 185535 0.66 0.627699
Target:  5'- gCGCCUCaucucGCcacCCGGCCgCGCGCCc -3'
miRNA:   3'- -GCGGAGgucguCGu--GGUCGG-GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 186011 0.66 0.627699
Target:  5'- cCGCCgcUCCGGgCccgGGC-CCGGaCCCGgGCCc -3'
miRNA:   3'- -GCGG--AGGUC-G---UCGuGGUC-GGGCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 149239 0.66 0.627699
Target:  5'- cCGCCgucgCCGgggucGCGGCGCCAccacccucGUCCcCGCCg -3'
miRNA:   3'- -GCGGa---GGU-----CGUCGUGGU--------CGGGcGCGG- -5'
10700 3' -63.4 NC_002794.1 + 69789 0.66 0.626735
Target:  5'- aGCCaCgAG-AGCGCCgccgcguAGCCCGcCGCCg -3'
miRNA:   3'- gCGGaGgUCgUCGUGG-------UCGGGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 122036 0.66 0.624809
Target:  5'- gCGUCUCguGCAGCaucACCGcgagauggauuacuGCCUcgGCGCCc -3'
miRNA:   3'- -GCGGAGguCGUCG---UGGU--------------CGGG--CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 141559 0.66 0.621921
Target:  5'- cCGCCaCCcGCGGCcgcgGCCuccgugaucaugacGCCCGCGUCg -3'
miRNA:   3'- -GCGGaGGuCGUCG----UGGu-------------CGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 64572 0.66 0.619032
Target:  5'- cCGCCUCCAGCgacucGGCAcgguccacuucuucCCggaGGacgucuucgucccgaCCCGCGCCc -3'
miRNA:   3'- -GCGGAGGUCG-----UCGU--------------GG---UC---------------GGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 79683 0.66 0.61807
Target:  5'- uGCUUCCucgAGCAGCucggGCCGccGCUCGUGUCc -3'
miRNA:   3'- gCGGAGG---UCGUCG----UGGU--CGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 135483 0.66 0.61807
Target:  5'- aCGCCgCCGucgacGC-GCGCgGGCCCGaUGCCc -3'
miRNA:   3'- -GCGGaGGU-----CGuCGUGgUCGGGC-GCGG- -5'
10700 3' -63.4 NC_002794.1 + 105653 0.66 0.61807
Target:  5'- cCGUCUCgCcGCGGCGCgCuccGCCCGgacCGCCg -3'
miRNA:   3'- -GCGGAG-GuCGUCGUG-Gu--CGGGC---GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.