miRNA display CGI


Results 1 - 20 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 193159 1.11 0.000567
Target:  5'- gCGCCUCCAGCAGCACCAGCCCGCGCCg -3'
miRNA:   3'- -GCGGAGGUCGUCGUGGUCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 194846 0.9 0.018777
Target:  5'- gCGUCUCCAGCcGCACCGucuGCCCGCGCCg -3'
miRNA:   3'- -GCGGAGGUCGuCGUGGU---CGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 186970 0.86 0.034023
Target:  5'- cCGCCUCCAGCAgcgcgcGCACCAGCUC-CGCCg -3'
miRNA:   3'- -GCGGAGGUCGU------CGUGGUCGGGcGCGG- -5'
10700 3' -63.4 NC_002794.1 + 194527 0.85 0.043868
Target:  5'- cCGCCggcCCAGCAGCGCCGccagcacGCCCGCGCg -3'
miRNA:   3'- -GCGGa--GGUCGUCGUGGU-------CGGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 184945 0.83 0.058225
Target:  5'- uGCCg-CAGCuGCGCCGGCCCGCGCa -3'
miRNA:   3'- gCGGagGUCGuCGUGGUCGGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 114213 0.82 0.066094
Target:  5'- gCGUCUCCGGCGGCAgCCAGCCgaucagCGCGUCg -3'
miRNA:   3'- -GCGGAGGUCGUCGU-GGUCGG------GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 194471 0.81 0.074795
Target:  5'- cCGCgCUCCAGCGGCuccuCCAGCcgccccuCCGCGCCc -3'
miRNA:   3'- -GCG-GAGGUCGUCGu---GGUCG-------GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 80436 0.81 0.085013
Target:  5'- cCGCCgCCGGCGGcCGCCGGCCCGUcggcgGCCc -3'
miRNA:   3'- -GCGGaGGUCGUC-GUGGUCGGGCG-----CGG- -5'
10700 3' -63.4 NC_002794.1 + 195215 0.8 0.087167
Target:  5'- cCGCCagCuGCGGCAgCAGCCCGCGCg -3'
miRNA:   3'- -GCGGagGuCGUCGUgGUCGGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 188336 0.8 0.089373
Target:  5'- cCGCCgCCGGCGGCGCCGucgcGCCCGUccgGCCg -3'
miRNA:   3'- -GCGGaGGUCGUCGUGGU----CGGGCG---CGG- -5'
10700 3' -63.4 NC_002794.1 + 60642 0.79 0.10122
Target:  5'- gGCg-CCGGCGGCGCCGGCCacccggcgCGCGCCg -3'
miRNA:   3'- gCGgaGGUCGUCGUGGUCGG--------GCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 55793 0.79 0.111473
Target:  5'- gGCCUCCAGCgagcgcagcgccgGGCGCgGGCgCGCGCUg -3'
miRNA:   3'- gCGGAGGUCG-------------UCGUGgUCGgGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 118266 0.78 0.120308
Target:  5'- gGCCggggCGGCGGCGCCGGCgucggggaCCGCGCCg -3'
miRNA:   3'- gCGGag--GUCGUCGUGGUCG--------GGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 113956 0.78 0.120308
Target:  5'- gGCUUCCuGCAGCcacuCCuGCUCGCGCCg -3'
miRNA:   3'- gCGGAGGuCGUCGu---GGuCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 90178 0.78 0.126349
Target:  5'- aGCCUCCgaggacgcgcGGgGGCACgGuGCCCGCGCCu -3'
miRNA:   3'- gCGGAGG----------UCgUCGUGgU-CGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 36901 0.78 0.129474
Target:  5'- aGCgUCCAgaggucGCGGCGCCGGcCCCGCGaCCg -3'
miRNA:   3'- gCGgAGGU------CGUCGUGGUC-GGGCGC-GG- -5'
10700 3' -63.4 NC_002794.1 + 43234 0.78 0.129474
Target:  5'- uGCgCUgCAGCGGCACCGGCCgGaaCGCCg -3'
miRNA:   3'- gCG-GAgGUCGUCGUGGUCGGgC--GCGG- -5'
10700 3' -63.4 NC_002794.1 + 123225 0.78 0.13267
Target:  5'- uCGUCUCgAGCGGCcuggccAUCAGCCUGUGCCa -3'
miRNA:   3'- -GCGGAGgUCGUCG------UGGUCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 112579 0.78 0.13267
Target:  5'- cCGCuCUCCAGCuGCGCCagGGCCCGUucgaacGCCu -3'
miRNA:   3'- -GCG-GAGGUCGuCGUGG--UCGGGCG------CGG- -5'
10700 3' -63.4 NC_002794.1 + 131257 0.78 0.13267
Target:  5'- aCGCCgCCGGCaccaccgccGGCACCAccGCCgGCGCCg -3'
miRNA:   3'- -GCGGaGGUCG---------UCGUGGU--CGGgCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.