miRNA display CGI


Results 1 - 20 of 490 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10700 3' -63.4 NC_002794.1 + 147 0.73 0.280355
Target:  5'- cCGCCgCaggGGC-GCACCAgcacGCCCGCGCCc -3'
miRNA:   3'- -GCGGaGg--UCGuCGUGGU----CGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 315 0.7 0.42533
Target:  5'- cCGCC-CCAcccccacGCGcGCGCCgccgacAGCCCGCGCg -3'
miRNA:   3'- -GCGGaGGU-------CGU-CGUGG------UCGGGCGCGg -5'
10700 3' -63.4 NC_002794.1 + 518 0.69 0.460297
Target:  5'- uGCCUCCGGUu---CUGGCCCGCcCCu -3'
miRNA:   3'- gCGGAGGUCGucguGGUCGGGCGcGG- -5'
10700 3' -63.4 NC_002794.1 + 832 0.69 0.477898
Target:  5'- -uCCUCCGGUccccGGCGcgugcguucggcCCAGCgCGCGCCc -3'
miRNA:   3'- gcGGAGGUCG----UCGU------------GGUCGgGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 890 0.67 0.551268
Target:  5'- gCGCgCgggCCGGguGCcaacGCCGcucCCCGCGCCu -3'
miRNA:   3'- -GCG-Ga--GGUCguCG----UGGUc--GGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 1012 0.7 0.423665
Target:  5'- aCGCCuuuuccuggcaUCCGGCccGCACCAcGCCCccuuccaacuucgaGCGCCc -3'
miRNA:   3'- -GCGG-----------AGGUCGu-CGUGGU-CGGG--------------CGCGG- -5'
10700 3' -63.4 NC_002794.1 + 1243 0.71 0.355195
Target:  5'- cCGUCUCCgAGCcGCccggagGCCAGUgUGCGCCa -3'
miRNA:   3'- -GCGGAGG-UCGuCG------UGGUCGgGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 6936 0.67 0.589264
Target:  5'- aGCCgCCGcGCGGCACCcucucggucucgGGCUCGCuCCc -3'
miRNA:   3'- gCGGaGGU-CGUCGUGG------------UCGGGCGcGG- -5'
10700 3' -63.4 NC_002794.1 + 7735 0.7 0.401575
Target:  5'- -uCCUCUAGUuguucucuGC-CCAGCCgGCGCCu -3'
miRNA:   3'- gcGGAGGUCGu-------CGuGGUCGGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 8295 0.7 0.412937
Target:  5'- aG-CUCCgacgaggagggcgaaGGCGGCACCGccgcGcCCCGCGCCa -3'
miRNA:   3'- gCgGAGG---------------UCGUCGUGGU----C-GGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 8526 0.67 0.583528
Target:  5'- cCGCC-CCugcacgaagucugggAGCAG-ACC-GUCCGCGCCu -3'
miRNA:   3'- -GCGGaGG---------------UCGUCgUGGuCGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 11368 0.66 0.637331
Target:  5'- aGCUUUCGGCAaaaGCCGGCCuCGacccaCGCCg -3'
miRNA:   3'- gCGGAGGUCGUcg-UGGUCGG-GC-----GCGG- -5'
10700 3' -63.4 NC_002794.1 + 11644 0.66 0.646959
Target:  5'- aGCgaCgGGCGGCcgacgACgCGGCCCGCcgGCCa -3'
miRNA:   3'- gCGgaGgUCGUCG-----UG-GUCGGGCG--CGG- -5'
10700 3' -63.4 NC_002794.1 + 12042 0.66 0.627699
Target:  5'- gCGCCUUCcccuGcCGGUAUCucuGGgCCGCGCCg -3'
miRNA:   3'- -GCGGAGGu---C-GUCGUGG---UCgGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 12216 0.74 0.228892
Target:  5'- uGCCggcggcgUCGGCGGCGCCGG-CgGCGCCg -3'
miRNA:   3'- gCGGa------GGUCGUCGUGGUCgGgCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 12426 0.69 0.477898
Target:  5'- gCGCCgaCUGGCAGCugU--CCCGCGUCa -3'
miRNA:   3'- -GCGGa-GGUCGUCGugGucGGGCGCGG- -5'
10700 3' -63.4 NC_002794.1 + 13332 0.69 0.443045
Target:  5'- cCGCUcCCccggucggggguGGCGGCGCCccucGCCCGgGCCc -3'
miRNA:   3'- -GCGGaGG------------UCGUCGUGGu---CGGGCgCGG- -5'
10700 3' -63.4 NC_002794.1 + 13790 0.66 0.617107
Target:  5'- uGgCUCCGGCcgucuucgcgacgGGC-CCGGCCgGCGgCg -3'
miRNA:   3'- gCgGAGGUCG-------------UCGuGGUCGGgCGCgG- -5'
10700 3' -63.4 NC_002794.1 + 14181 0.77 0.157151
Target:  5'- gCGCCUCCGagacGuCAGCGucCCGGCCCGCugGCCg -3'
miRNA:   3'- -GCGGAGGU----C-GUCGU--GGUCGGGCG--CGG- -5'
10700 3' -63.4 NC_002794.1 + 14481 0.74 0.239593
Target:  5'- cCGCgCUCgCuguucGCGGCGgCGGCCCGCGCUc -3'
miRNA:   3'- -GCG-GAG-Gu----CGUCGUgGUCGGGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.