miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10701 3' -53.9 NC_002794.1 + 42645 0.72 0.750008
Target:  5'- cGGAGuCGCGGcCGAAGccGA-CGGCGCc -3'
miRNA:   3'- uUCUC-GCGCU-GCUUCuuCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 43164 0.66 0.974622
Target:  5'- cAGAGCuCGGCGAcGGAAuagcGGUUGcGCGCg -3'
miRNA:   3'- uUCUCGcGCUGCU-UCUU----CUAGC-CGCG- -5'
10701 3' -53.9 NC_002794.1 + 44326 0.86 0.166047
Target:  5'- -cGAGCGCGgcgGCGAAGAAGA-CGGCGCc -3'
miRNA:   3'- uuCUCGCGC---UGCUUCUUCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 44362 0.66 0.979438
Target:  5'- cGAGAGCGCGGCG---------GGCGCg -3'
miRNA:   3'- -UUCUCGCGCUGCuucuucuagCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 46312 0.74 0.68044
Target:  5'- -cGAGCGCGGCGgcGA----CGGCGCc -3'
miRNA:   3'- uuCUCGCGCUGCuuCUucuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 48576 0.68 0.942702
Target:  5'- cAGAuGgGCGAgcCGGAGGAG--CGGCGCg -3'
miRNA:   3'- uUCU-CgCGCU--GCUUCUUCuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 50582 0.69 0.891999
Target:  5'- -cGuGCGCGGCGGcuGGguGGcCGGCGCc -3'
miRNA:   3'- uuCuCGCGCUGCU--UCuuCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 51058 0.67 0.962621
Target:  5'- cGAGAcgGCgGCGACGgcGAccuccgAGcgUGGCGCg -3'
miRNA:   3'- -UUCU--CG-CGCUGCuuCU------UCuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 54456 0.67 0.951357
Target:  5'- cAGGGCGCGAcCGGAcaccuuGggGAUgaUGGCGg -3'
miRNA:   3'- uUCUCGCGCU-GCUU------CuuCUA--GCCGCg -5'
10701 3' -53.9 NC_002794.1 + 55208 0.67 0.951357
Target:  5'- --cGGCGCGGCGGAGGc---CGGCGg -3'
miRNA:   3'- uucUCGCGCUGCUUCUucuaGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 55274 0.7 0.847893
Target:  5'- gGGGGGCggcgguggcgGCGACGAGGgcGGcggCGGCGUc -3'
miRNA:   3'- -UUCUCG----------CGCUGCUUCuuCUa--GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 55318 0.66 0.974622
Target:  5'- -cGGGCGCGGgcggcuucCGAGGAcccgGGGUC-GCGCc -3'
miRNA:   3'- uuCUCGCGCU--------GCUUCU----UCUAGcCGCG- -5'
10701 3' -53.9 NC_002794.1 + 61161 0.73 0.740307
Target:  5'- -cGAGCGCG-CGGuccGGAUCGGCGg -3'
miRNA:   3'- uuCUCGCGCuGCUucuUCUAGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 61909 0.7 0.861164
Target:  5'- -cGAGCGCaGCGAcgucgucacccucgAGGAGAUC-GCGCu -3'
miRNA:   3'- uuCUCGCGcUGCU--------------UCUUCUAGcCGCG- -5'
10701 3' -53.9 NC_002794.1 + 62080 0.69 0.885192
Target:  5'- --cGGCgGCGACGAcGgcGAcgCGGCGCg -3'
miRNA:   3'- uucUCG-CGCUGCUuCuuCUa-GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 62488 0.72 0.787681
Target:  5'- -cGAGCGCGAgUGGAcGgcGggCGGCGCc -3'
miRNA:   3'- uuCUCGCGCU-GCUU-CuuCuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 64827 0.67 0.962621
Target:  5'- cGAGccGGCGcCGACGAcc-GGA-CGGCGCg -3'
miRNA:   3'- -UUC--UCGC-GCUGCUucuUCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 66514 0.66 0.969924
Target:  5'- -cGAGCGauaGGCcguccccggguccgcGAAGGUCGGCGCc -3'
miRNA:   3'- uuCUCGCg--CUGcuu------------CUUCUAGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 66856 0.71 0.823114
Target:  5'- --cGGCGCGGCGAGGccg--CGGCGUg -3'
miRNA:   3'- uucUCGCGCUGCUUCuucuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 69374 0.77 0.515479
Target:  5'- -cGGGCGCGACGAagcgaacagaaacaGGAAGAgcggccaGGCGCc -3'
miRNA:   3'- uuCUCGCGCUGCU--------------UCUUCUag-----CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.