miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10701 3' -53.9 NC_002794.1 + 862 0.71 0.83982
Target:  5'- cAGcGCGCGcccGCGAGGc-GGUCGGCGUg -3'
miRNA:   3'- uUCuCGCGC---UGCUUCuuCUAGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 1981 0.67 0.947146
Target:  5'- cGGGGGCGUGuuccucacaaaaAUGAGGAAGuccgaGGCGCc -3'
miRNA:   3'- -UUCUCGCGC------------UGCUUCUUCuag--CCGCG- -5'
10701 3' -53.9 NC_002794.1 + 2476 0.66 0.971928
Target:  5'- --aAGCGCG-CGAGGgcGAUcCGGUGg -3'
miRNA:   3'- uucUCGCGCuGCUUCuuCUA-GCCGCg -5'
10701 3' -53.9 NC_002794.1 + 8628 0.7 0.847893
Target:  5'- cGGAGCGCGGu--GGAAGA-CGuGCGCg -3'
miRNA:   3'- uUCUCGCGCUgcuUCUUCUaGC-CGCG- -5'
10701 3' -53.9 NC_002794.1 + 8740 0.69 0.887942
Target:  5'- uGGAGCGCGugucucgggcgugucGCGAcggcguGAAGA-CGGCGUg -3'
miRNA:   3'- uUCUCGCGC---------------UGCUu-----CUUCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 14610 0.66 0.979438
Target:  5'- -cGGGCaccGCGACGggGccgGAGA-CGGgGCc -3'
miRNA:   3'- uuCUCG---CGCUGCuuC---UUCUaGCCgCG- -5'
10701 3' -53.9 NC_002794.1 + 17497 0.67 0.962621
Target:  5'- -cGAuCGcCGACGccGGccgAGAUCGGCGCc -3'
miRNA:   3'- uuCUcGC-GCUGCuuCU---UCUAGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 20030 0.66 0.979438
Target:  5'- cGAGAGCGCGGucCGGAucgcgcucGAccAGAUC-GCGCu -3'
miRNA:   3'- -UUCUCGCGCU--GCUU--------CU--UCUAGcCGCG- -5'
10701 3' -53.9 NC_002794.1 + 21629 0.67 0.951357
Target:  5'- cGGGAG-GaCGACGAGGAAGAagacgaagaagCGGCGg -3'
miRNA:   3'- -UUCUCgC-GCUGCUUCUUCUa----------GCCGCg -5'
10701 3' -53.9 NC_002794.1 + 21913 0.68 0.927944
Target:  5'- uGGuG-GCGGCGGAGAcgacggcggcGGcgCGGCGCu -3'
miRNA:   3'- uUCuCgCGCUGCUUCU----------UCuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 23968 0.67 0.955337
Target:  5'- -cGAGCcaGCGGCGAGGc----CGGCGCc -3'
miRNA:   3'- uuCUCG--CGCUGCUUCuucuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 32005 0.66 0.965934
Target:  5'- -cGAGC-CGACGcAGAccaggcaggGGAcgCGGCGCu -3'
miRNA:   3'- uuCUCGcGCUGCuUCU---------UCUa-GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 32639 0.75 0.58849
Target:  5'- gAGGGGgGCGACGAccgGGgcGA-CGGCGCc -3'
miRNA:   3'- -UUCUCgCGCUGCU---UCuuCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 36885 0.66 0.965934
Target:  5'- cAGGuAGCGCGugcagaGCGuccAGAGGucgCGGCGCc -3'
miRNA:   3'- -UUC-UCGCGC------UGCu--UCUUCua-GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 36955 0.77 0.515479
Target:  5'- ---cGCGCGGCGGcaggcagucgcgcaGGAGGAUCGcGCGCa -3'
miRNA:   3'- uucuCGCGCUGCU--------------UCUUCUAGC-CGCG- -5'
10701 3' -53.9 NC_002794.1 + 37282 0.7 0.867949
Target:  5'- -cGGGCGCGGCGuacaacgacacguAGggGAacgCGGgGCa -3'
miRNA:   3'- uuCUCGCGCUGCu------------UCuuCUa--GCCgCG- -5'
10701 3' -53.9 NC_002794.1 + 37732 0.67 0.955337
Target:  5'- -cGAGCgGCGGCGccGccGGcggCGGCGCg -3'
miRNA:   3'- uuCUCG-CGCUGCuuCuuCUa--GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 38491 0.68 0.922547
Target:  5'- gAGGaAGCGCGGCGgcGccGGUCGcCGCc -3'
miRNA:   3'- -UUC-UCGCGCUGCuuCuuCUAGCcGCG- -5'
10701 3' -53.9 NC_002794.1 + 41958 0.73 0.740307
Target:  5'- -cGuGCGCGGCcuGGAAGGUCGGCu- -3'
miRNA:   3'- uuCuCGCGCUGcuUCUUCUAGCCGcg -5'
10701 3' -53.9 NC_002794.1 + 42594 0.71 0.831558
Target:  5'- gGAGGGCGCGGCGGccGGGAgCGG-GCu -3'
miRNA:   3'- -UUCUCGCGCUGCUucUUCUaGCCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.