miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10701 3' -53.9 NC_002794.1 + 192217 1.1 0.005273
Target:  5'- gAAGAGCGCGACGAAGAAGAUCGGCGCu -3'
miRNA:   3'- -UUCUCGCGCUGCUUCUUCUAGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 44326 0.86 0.166047
Target:  5'- -cGAGCGCGgcgGCGAAGAAGA-CGGCGCc -3'
miRNA:   3'- uuCUCGCGC---UGCUUCUUCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 191881 0.82 0.2847
Target:  5'- gGAGGGgGCGGCGGAGGcgGGAUCGGCa- -3'
miRNA:   3'- -UUCUCgCGCUGCUUCU--UCUAGCCGcg -5'
10701 3' -53.9 NC_002794.1 + 145899 0.81 0.312388
Target:  5'- -cGAGCGCGACGggGGAG-UCGaccGCGCc -3'
miRNA:   3'- uuCUCGCGCUGCuuCUUCuAGC---CGCG- -5'
10701 3' -53.9 NC_002794.1 + 116058 0.81 0.312388
Target:  5'- gGGGAGCGCGACuGggGucgcGGAgcgcUCGGCGCg -3'
miRNA:   3'- -UUCUCGCGCUG-CuuCu---UCU----AGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 117851 0.79 0.381959
Target:  5'- cGGAGCGCGACGggGGc---UGGCGCg -3'
miRNA:   3'- uUCUCGCGCUGCuuCUucuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 145613 0.79 0.3903
Target:  5'- -cGGGCGCGACGAGGAgcucggcccggAGAUCGGacccgaGCu -3'
miRNA:   3'- uuCUCGCGCUGCUUCU-----------UCUAGCCg-----CG- -5'
10701 3' -53.9 NC_002794.1 + 115974 0.79 0.416024
Target:  5'- gGGGAGCGgGACGggGAg---CGGCGCc -3'
miRNA:   3'- -UUCUCGCgCUGCuuCUucuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 123810 0.78 0.451886
Target:  5'- cGGGGGCGCgGACGAGcAGGAgCGGCGCc -3'
miRNA:   3'- -UUCUCGCG-CUGCUUcUUCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 136142 0.77 0.508655
Target:  5'- gGAGGGCGaggacgggGGCGAAGAGGAagucuUCGGUGCu -3'
miRNA:   3'- -UUCUCGCg-------CUGCUUCUUCU-----AGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 36955 0.77 0.515479
Target:  5'- ---cGCGCGGCGGcaggcagucgcgcaGGAGGAUCGcGCGCa -3'
miRNA:   3'- uucuCGCGCUGCU--------------UCUUCUAGC-CGCG- -5'
10701 3' -53.9 NC_002794.1 + 69374 0.77 0.515479
Target:  5'- -cGGGCGCGACGAagcgaacagaaacaGGAAGAgcggccaGGCGCc -3'
miRNA:   3'- uuCUCGCGCUGCU--------------UCUUCUag-----CCGCG- -5'
10701 3' -53.9 NC_002794.1 + 182457 0.76 0.528249
Target:  5'- gGAGAGCGCGGCGGu---GcgCGGCGUc -3'
miRNA:   3'- -UUCUCGCGCUGCUucuuCuaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 95815 0.76 0.548118
Target:  5'- gGGGAGCgGCGGCGGccGGggGAgCGGCGg -3'
miRNA:   3'- -UUCUCG-CGCUGCU--UCuuCUaGCCGCg -5'
10701 3' -53.9 NC_002794.1 + 146661 0.76 0.578333
Target:  5'- -cGAGcCGUugcugGACGAGGAGGAcgucUCGGCGCu -3'
miRNA:   3'- uuCUC-GCG-----CUGCUUCUUCU----AGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 148174 0.75 0.58849
Target:  5'- aGGGGGuCGCGACgGAAGGAGGggggucucCGGCGCc -3'
miRNA:   3'- -UUCUC-GCGCUG-CUUCUUCUa-------GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 32639 0.75 0.58849
Target:  5'- gAGGGGgGCGACGAccgGGgcGA-CGGCGCc -3'
miRNA:   3'- -UUCUCgCGCUGCU---UCuuCUaGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 100222 0.75 0.629366
Target:  5'- -cGAGgGCGuCGAGGucuucGAGGUCGGCGUc -3'
miRNA:   3'- uuCUCgCGCuGCUUC-----UUCUAGCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 101432 0.74 0.639609
Target:  5'- ---uGCGCGACGAuccGggGAcgcCGGCGCg -3'
miRNA:   3'- uucuCGCGCUGCUu--CuuCUa--GCCGCG- -5'
10701 3' -53.9 NC_002794.1 + 142380 0.74 0.649846
Target:  5'- gGAGGGaGCGGCGGAGAcGG-CGGUGCa -3'
miRNA:   3'- -UUCUCgCGCUGCUUCUuCUaGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.