Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10701 | 5' | -57.6 | NC_002794.1 | + | 82047 | 0.69 | 0.765398 |
Target: 5'- gCGGCGGCgGCGGcggCG-UCGUC-CUCGg -3' miRNA: 3'- -GCUGCCG-CGCCaa-GCgAGCAGaGAGC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 88939 | 0.71 | 0.670787 |
Target: 5'- gCGAUGGCGCGGUguaacUCGCUCGguaCgagCGu -3' miRNA: 3'- -GCUGCCGCGCCA-----AGCGAGCagaGa--GC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 89275 | 0.71 | 0.709417 |
Target: 5'- uCGACGGUGUGGacgaucgugUCGCUCuccGUCcgaUCUCGg -3' miRNA: 3'- -GCUGCCGCGCCa--------AGCGAG---CAG---AGAGC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 91230 | 0.68 | 0.817484 |
Target: 5'- gGACGGCGCGGcg-GC-CGUCgggcugcgCUCGc -3' miRNA: 3'- gCUGCCGCGCCaagCGaGCAGa-------GAGC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 95234 | 0.66 | 0.926019 |
Target: 5'- aGACGGU-UGGUUCGCggcccCGUUUgUCGa -3' miRNA: 3'- gCUGCCGcGCCAAGCGa----GCAGAgAGC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 96421 | 0.68 | 0.841548 |
Target: 5'- uCGAucuCGGCGCGG--CGCUCGaUCUCa-- -3' miRNA: 3'- -GCU---GCCGCGCCaaGCGAGC-AGAGagc -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 99600 | 0.67 | 0.864047 |
Target: 5'- gCGGCGGCGCG---CGCUCG-CgccgcCUCGg -3' miRNA: 3'- -GCUGCCGCGCcaaGCGAGCaGa----GAGC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 117707 | 0.7 | 0.747085 |
Target: 5'- gCGACGGCGUGGca-GCUccgCGUCUgCUCc -3' miRNA: 3'- -GCUGCCGCGCCaagCGA---GCAGA-GAGc -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 118292 | 0.68 | 0.84923 |
Target: 5'- gGACcGCGcCGGgcgcgUCGCUCGUCgUCgUCGu -3' miRNA: 3'- gCUGcCGC-GCCa----AGCGAGCAG-AG-AGC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 119443 | 0.67 | 0.878099 |
Target: 5'- aCGGCGGCgGCGGUg-GCggCGUCgacUUCGa -3' miRNA: 3'- -GCUGCCG-CGCCAagCGa-GCAGa--GAGC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 120441 | 0.66 | 0.909654 |
Target: 5'- aGcCGGCGUGGaaCGCcgCGUCggccuggCUCGa -3' miRNA: 3'- gCuGCCGCGCCaaGCGa-GCAGa------GAGC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 121586 | 0.69 | 0.792034 |
Target: 5'- uGACgGGCGCGGggUCGUUCGgcgacgaUUUCGa -3' miRNA: 3'- gCUG-CCGCGCCa-AGCGAGCag-----AGAGC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 122790 | 0.7 | 0.747085 |
Target: 5'- uCGACGGCGUGGagUUCGC-CGUCa---- -3' miRNA: 3'- -GCUGCCGCGCC--AAGCGaGCAGagagc -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 127362 | 0.79 | 0.27862 |
Target: 5'- gCGGCGGCGCGGc-CGCUCGUgUCggCGg -3' miRNA: 3'- -GCUGCCGCGCCaaGCGAGCAgAGa-GC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 127613 | 0.66 | 0.915327 |
Target: 5'- -aGCGGCGCGGacCGgaCUCGUCg-UCGa -3' miRNA: 3'- gcUGCCGCGCCaaGC--GAGCAGagAGC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 132500 | 0.67 | 0.864047 |
Target: 5'- aCGAUGGCGUGGcggcaUCGCUgGaC-CUCGg -3' miRNA: 3'- -GCUGCCGCGCCa----AGCGAgCaGaGAGC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 134127 | 0.69 | 0.765398 |
Target: 5'- cCGACGGCGCGGcgaGCgCGgaagCUCGg -3' miRNA: 3'- -GCUGCCGCGCCaagCGaGCaga-GAGC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 138116 | 0.73 | 0.573188 |
Target: 5'- gGAgGGCGUGGU--GCUCGUCgccggUCUCGg -3' miRNA: 3'- gCUgCCGCGCCAagCGAGCAG-----AGAGC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 138709 | 0.67 | 0.897663 |
Target: 5'- gGGCGGCGUGGacUCGCgUCGagccggCUCGa -3' miRNA: 3'- gCUGCCGCGCCa-AGCG-AGCaga---GAGC- -5' |
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10701 | 5' | -57.6 | NC_002794.1 | + | 149280 | 0.73 | 0.582879 |
Target: 5'- cCGGCGGCGCGGcg-GCUCG-CUCaCGg -3' miRNA: 3'- -GCUGCCGCGCCaagCGAGCaGAGaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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