miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10701 5' -57.6 NC_002794.1 + 620 0.67 0.864047
Target:  5'- aGGCGGCcCGGUguggCGUUCGcCUCcCGu -3'
miRNA:   3'- gCUGCCGcGCCAa---GCGAGCaGAGaGC- -5'
10701 5' -57.6 NC_002794.1 + 4266 0.69 0.792034
Target:  5'- uCGAuCGGUGaCGGUggucuuucUCGCUCGguggugguuuuUCUCUCGc -3'
miRNA:   3'- -GCU-GCCGC-GCCA--------AGCGAGC-----------AGAGAGC- -5'
10701 5' -57.6 NC_002794.1 + 10604 0.7 0.747085
Target:  5'- gGACGGUaaGCGGUUaGCUCGUCg-UCa -3'
miRNA:   3'- gCUGCCG--CGCCAAgCGAGCAGagAGc -5'
10701 5' -57.6 NC_002794.1 + 10836 0.71 0.680507
Target:  5'- aGACGGCGCcc--UGCUCGUCacgCUCGa -3'
miRNA:   3'- gCUGCCGCGccaaGCGAGCAGa--GAGC- -5'
10701 5' -57.6 NC_002794.1 + 14702 0.68 0.841548
Target:  5'- uGACGGCGUGGggagcgcUGCUCGcggcuUCggCUCGg -3'
miRNA:   3'- gCUGCCGCGCCaa-----GCGAGC-----AGa-GAGC- -5'
10701 5' -57.6 NC_002794.1 + 15339 0.7 0.737786
Target:  5'- gGACGGCGUGGccagauggaaUCGCaCG-CUCUCGa -3'
miRNA:   3'- gCUGCCGCGCCa---------AGCGaGCaGAGAGC- -5'
10701 5' -57.6 NC_002794.1 + 18703 0.66 0.909654
Target:  5'- aCGGCGGCgGCGGUcCGgaCGUCggagC-CGa -3'
miRNA:   3'- -GCUGCCG-CGCCAaGCgaGCAGa---GaGC- -5'
10701 5' -57.6 NC_002794.1 + 21669 0.68 0.841548
Target:  5'- uGGCGGCgGCGGUauUCGCcCG-CUC-CGg -3'
miRNA:   3'- gCUGCCG-CGCCA--AGCGaGCaGAGaGC- -5'
10701 5' -57.6 NC_002794.1 + 21933 0.76 0.418148
Target:  5'- gCGGCGGCGCGG--CGCUCGUCgaaggCcgUCGg -3'
miRNA:   3'- -GCUGCCGCGCCaaGCGAGCAGa----G--AGC- -5'
10701 5' -57.6 NC_002794.1 + 30990 0.66 0.920783
Target:  5'- gCGACGGCGgGGUcuUCGCcggaCGUCgccgccgcCUCc -3'
miRNA:   3'- -GCUGCCGCgCCA--AGCGa---GCAGa-------GAGc -5'
10701 5' -57.6 NC_002794.1 + 35764 0.68 0.841548
Target:  5'- aCGACGuCGCGGcaccgUCGCcggcgUCGUCUC-CGg -3'
miRNA:   3'- -GCUGCcGCGCCa----AGCG-----AGCAGAGaGC- -5'
10701 5' -57.6 NC_002794.1 + 37750 0.7 0.741516
Target:  5'- gCGGCGGCGCGGcggCGCcggcgggagcggccgUCGUCg-UCGg -3'
miRNA:   3'- -GCUGCCGCGCCaa-GCG---------------AGCAGagAGC- -5'
10701 5' -57.6 NC_002794.1 + 38499 0.66 0.926019
Target:  5'- gCGGCGGCGcCGGUcgcCGC-CGcCUCcgCGa -3'
miRNA:   3'- -GCUGCCGC-GCCAa--GCGaGCaGAGa-GC- -5'
10701 5' -57.6 NC_002794.1 + 61896 0.66 0.920247
Target:  5'- gCGGCGaGCGCGGcgagCGCagcgacgUCGUCaccCUCGa -3'
miRNA:   3'- -GCUGC-CGCGCCaa--GCG-------AGCAGa--GAGC- -5'
10701 5' -57.6 NC_002794.1 + 63323 0.72 0.651268
Target:  5'- cCGGCGgggggcccgaGCGCGGaccggUCGCUCGccCUCUCGc -3'
miRNA:   3'- -GCUGC----------CGCGCCa----AGCGAGCa-GAGAGC- -5'
10701 5' -57.6 NC_002794.1 + 65272 0.66 0.909654
Target:  5'- gCGGCGGCGCcuccUCGCcccccucggcgUCGUC-CUCGa -3'
miRNA:   3'- -GCUGCCGCGcca-AGCG-----------AGCAGaGAGC- -5'
10701 5' -57.6 NC_002794.1 + 66018 0.72 0.61212
Target:  5'- aGGCGGcCGCGGUcgUCGC-CGUCgUCgUCGg -3'
miRNA:   3'- gCUGCC-GCGCCA--AGCGaGCAG-AG-AGC- -5'
10701 5' -57.6 NC_002794.1 + 67960 0.66 0.920783
Target:  5'- gGACGGCGggcccagaCGGgUCGgUCGcUUCUCGa -3'
miRNA:   3'- gCUGCCGC--------GCCaAGCgAGCaGAGAGC- -5'
10701 5' -57.6 NC_002794.1 + 70341 0.69 0.792034
Target:  5'- cCGACGGC-CGGgcgccCGCUCGUCcgcccacccgCUCGc -3'
miRNA:   3'- -GCUGCCGcGCCaa---GCGAGCAGa---------GAGC- -5'
10701 5' -57.6 NC_002794.1 + 78443 0.74 0.516036
Target:  5'- gCGGCGGaCGCGGacgCGCUCGcggUCUCGg -3'
miRNA:   3'- -GCUGCC-GCGCCaa-GCGAGCag-AGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.