miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10701 5' -57.6 NC_002794.1 + 192252 1.08 0.003929
Target:  5'- cCGACGGCGCGGUUCGCUCGUCUCUCGc -3'
miRNA:   3'- -GCUGCCGCGCCAAGCGAGCAGAGAGC- -5'
10701 5' -57.6 NC_002794.1 + 127362 0.79 0.27862
Target:  5'- gCGGCGGCGCGGc-CGCUCGUgUCggCGg -3'
miRNA:   3'- -GCUGCCGCGCCaaGCGAGCAgAGa-GC- -5'
10701 5' -57.6 NC_002794.1 + 21933 0.76 0.418148
Target:  5'- gCGGCGGCGCGG--CGCUCGUCgaaggCcgUCGg -3'
miRNA:   3'- -GCUGCCGCGCCaaGCGAGCAGa----G--AGC- -5'
10701 5' -57.6 NC_002794.1 + 78443 0.74 0.516036
Target:  5'- gCGGCGGaCGCGGacgCGCUCGcggUCUCGg -3'
miRNA:   3'- -GCUGCC-GCGCCaa-GCGAGCag-AGAGC- -5'
10701 5' -57.6 NC_002794.1 + 186301 0.73 0.553928
Target:  5'- aGGCGGCcggucgccGCGGcgCGCUCGUC-CUCc -3'
miRNA:   3'- gCUGCCG--------CGCCaaGCGAGCAGaGAGc -5'
10701 5' -57.6 NC_002794.1 + 138116 0.73 0.573188
Target:  5'- gGAgGGCGUGGU--GCUCGUCgccggUCUCGg -3'
miRNA:   3'- gCUgCCGCGCCAagCGAGCAG-----AGAGC- -5'
10701 5' -57.6 NC_002794.1 + 149280 0.73 0.582879
Target:  5'- cCGGCGGCGCGGcg-GCUCG-CUCaCGg -3'
miRNA:   3'- -GCUGCCGCGCCaagCGAGCaGAGaGC- -5'
10701 5' -57.6 NC_002794.1 + 66018 0.72 0.61212
Target:  5'- aGGCGGcCGCGGUcgUCGC-CGUCgUCgUCGg -3'
miRNA:   3'- gCUGCC-GCGCCA--AGCGaGCAG-AG-AGC- -5'
10701 5' -57.6 NC_002794.1 + 63323 0.72 0.651268
Target:  5'- cCGGCGgggggcccgaGCGCGGaccggUCGCUCGccCUCUCGc -3'
miRNA:   3'- -GCUGC----------CGCGCCa----AGCGAGCa-GAGAGC- -5'
10701 5' -57.6 NC_002794.1 + 179125 0.71 0.661038
Target:  5'- gGGC-GCGCGGUcggUCGaUCGUCUCUCc -3'
miRNA:   3'- gCUGcCGCGCCA---AGCgAGCAGAGAGc -5'
10701 5' -57.6 NC_002794.1 + 88939 0.71 0.670787
Target:  5'- gCGAUGGCGCGGUguaacUCGCUCGguaCgagCGu -3'
miRNA:   3'- -GCUGCCGCGCCA-----AGCGAGCagaGa--GC- -5'
10701 5' -57.6 NC_002794.1 + 10836 0.71 0.680507
Target:  5'- aGACGGCGCcc--UGCUCGUCacgCUCGa -3'
miRNA:   3'- gCUGCCGCGccaaGCGAGCAGa--GAGC- -5'
10701 5' -57.6 NC_002794.1 + 89275 0.71 0.709417
Target:  5'- uCGACGGUGUGGacgaucgugUCGCUCuccGUCcgaUCUCGg -3'
miRNA:   3'- -GCUGCCGCGCCa--------AGCGAG---CAG---AGAGC- -5'
10701 5' -57.6 NC_002794.1 + 15339 0.7 0.737786
Target:  5'- gGACGGCGUGGccagauggaaUCGCaCG-CUCUCGa -3'
miRNA:   3'- gCUGCCGCGCCa---------AGCGaGCaGAGAGC- -5'
10701 5' -57.6 NC_002794.1 + 37750 0.7 0.741516
Target:  5'- gCGGCGGCGCGGcggCGCcggcgggagcggccgUCGUCg-UCGg -3'
miRNA:   3'- -GCUGCCGCGCCaa-GCG---------------AGCAGagAGC- -5'
10701 5' -57.6 NC_002794.1 + 10604 0.7 0.747085
Target:  5'- gGACGGUaaGCGGUUaGCUCGUCg-UCa -3'
miRNA:   3'- gCUGCCG--CGCCAAgCGAGCAGagAGc -5'
10701 5' -57.6 NC_002794.1 + 117707 0.7 0.747085
Target:  5'- gCGACGGCGUGGca-GCUccgCGUCUgCUCc -3'
miRNA:   3'- -GCUGCCGCGCCaagCGA---GCAGA-GAGc -5'
10701 5' -57.6 NC_002794.1 + 122790 0.7 0.747085
Target:  5'- uCGACGGCGUGGagUUCGC-CGUCa---- -3'
miRNA:   3'- -GCUGCCGCGCC--AAGCGaGCAGagagc -5'
10701 5' -57.6 NC_002794.1 + 185401 0.7 0.756292
Target:  5'- aCGAgGGCGCGGgcccgacCGC-CGUCgaCUCGa -3'
miRNA:   3'- -GCUgCCGCGCCaa-----GCGaGCAGa-GAGC- -5'
10701 5' -57.6 NC_002794.1 + 82047 0.69 0.765398
Target:  5'- gCGGCGGCgGCGGcggCG-UCGUC-CUCGg -3'
miRNA:   3'- -GCUGCCG-CGCCaa-GCgAGCAGaGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.