miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10702 3' -53.3 NC_002794.1 + 47334 0.66 0.989418
Target:  5'- --cCGgcucCCGCGGCgGCggccucCGGACGUUCGc -3'
miRNA:   3'- uuaGCa---GGCGCUG-CGa-----GCUUGCAAGC- -5'
10702 3' -53.3 NC_002794.1 + 40632 0.66 0.989418
Target:  5'- ---aGUCCGCGAgCGCgagcUGAGCGggCa -3'
miRNA:   3'- uuagCAGGCGCU-GCGa---GCUUGCaaGc -5'
10702 3' -53.3 NC_002794.1 + 110620 0.66 0.989418
Target:  5'- --gCGggagCCGCGGCGCcgCGGcgGCGgggUCGg -3'
miRNA:   3'- uuaGCa---GGCGCUGCGa-GCU--UGCa--AGC- -5'
10702 3' -53.3 NC_002794.1 + 190611 0.66 0.989418
Target:  5'- ---gGUCCGCGACaGC-CGcAgGUUCGa -3'
miRNA:   3'- uuagCAGGCGCUG-CGaGCuUgCAAGC- -5'
10702 3' -53.3 NC_002794.1 + 128679 0.66 0.988021
Target:  5'- uAAUCG-CCGCGGCGgUcCGGAgGcUCGg -3'
miRNA:   3'- -UUAGCaGGCGCUGCgA-GCUUgCaAGC- -5'
10702 3' -53.3 NC_002794.1 + 105380 0.66 0.988021
Target:  5'- ---gGUCCGaca-GCUCGAGCuGUUCGg -3'
miRNA:   3'- uuagCAGGCgcugCGAGCUUG-CAAGC- -5'
10702 3' -53.3 NC_002794.1 + 11875 0.66 0.988021
Target:  5'- --cCGccCCGCGACGggucCUCGAGCGggUUCGu -3'
miRNA:   3'- uuaGCa-GGCGCUGC----GAGCUUGC--AAGC- -5'
10702 3' -53.3 NC_002794.1 + 60217 0.66 0.988021
Target:  5'- --aCGaCCGCGACGCcgcCGAGCGcgCc -3'
miRNA:   3'- uuaGCaGGCGCUGCGa--GCUUGCaaGc -5'
10702 3' -53.3 NC_002794.1 + 108177 0.66 0.988021
Target:  5'- --aCG-CCGCGACGCgcggacugCGAGCGg--- -3'
miRNA:   3'- uuaGCaGGCGCUGCGa-------GCUUGCaagc -5'
10702 3' -53.3 NC_002794.1 + 142411 0.66 0.988021
Target:  5'- --gCGUCgGCGGCGC-CGGGCGc--- -3'
miRNA:   3'- uuaGCAGgCGCUGCGaGCUUGCaagc -5'
10702 3' -53.3 NC_002794.1 + 52781 0.66 0.986486
Target:  5'- --gCGggaUCGUGACGCUCGAGCcgcucgUCGg -3'
miRNA:   3'- uuaGCa--GGCGCUGCGAGCUUGca----AGC- -5'
10702 3' -53.3 NC_002794.1 + 98972 0.66 0.986325
Target:  5'- --cCGUCgGCGGCGCcguggccUCGGugG-UCGg -3'
miRNA:   3'- uuaGCAGgCGCUGCG-------AGCUugCaAGC- -5'
10702 3' -53.3 NC_002794.1 + 17449 0.66 0.982969
Target:  5'- -cUCGggcCCGCGACcgaGgUCGAAgGUUCGc -3'
miRNA:   3'- uuAGCa--GGCGCUG---CgAGCUUgCAAGC- -5'
10702 3' -53.3 NC_002794.1 + 156847 0.66 0.982969
Target:  5'- gGGUCGgugCCGCGcguuccCGCUCGAgGCGccUUCGa -3'
miRNA:   3'- -UUAGCa--GGCGCu-----GCGAGCU-UGC--AAGC- -5'
10702 3' -53.3 NC_002794.1 + 119506 0.66 0.982969
Target:  5'- gGGUCGUCgGCGGCGCg-GAGCcGgccgCGg -3'
miRNA:   3'- -UUAGCAGgCGCUGCGagCUUG-Caa--GC- -5'
10702 3' -53.3 NC_002794.1 + 122015 0.66 0.982969
Target:  5'- cGUCGUCUucuuCGGCGC-CGGGCGUcUCGu -3'
miRNA:   3'- uUAGCAGGc---GCUGCGaGCUUGCA-AGC- -5'
10702 3' -53.3 NC_002794.1 + 22597 0.66 0.98097
Target:  5'- -cUCGgcacggUCGgGACGCUCGAGcCGaUCGg -3'
miRNA:   3'- uuAGCa-----GGCgCUGCGAGCUU-GCaAGC- -5'
10702 3' -53.3 NC_002794.1 + 102444 0.67 0.9788
Target:  5'- --aUGUCCGagcuGACGCUCGAggagauGCGgcgcgUCGg -3'
miRNA:   3'- uuaGCAGGCg---CUGCGAGCU------UGCa----AGC- -5'
10702 3' -53.3 NC_002794.1 + 65166 0.67 0.977414
Target:  5'- --cCGUCCGUGGCGC-CGAgaccggcgggugccgGCGaggUCGg -3'
miRNA:   3'- uuaGCAGGCGCUGCGaGCU---------------UGCa--AGC- -5'
10702 3' -53.3 NC_002794.1 + 21893 0.67 0.976453
Target:  5'- --gUGUCCGCGGCcuGCgUCGGugGUggCGg -3'
miRNA:   3'- uuaGCAGGCGCUG--CG-AGCUugCAa-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.