Results 21 - 40 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10702 | 3' | -53.3 | NC_002794.1 | + | 13953 | 0.68 | 0.961808 |
Target: 5'- -uUCGUgCGUGucgagcCGCUCGGagACGUUCGc -3' miRNA: 3'- uuAGCAgGCGCu-----GCGAGCU--UGCAAGC- -5' |
|||||||
10702 | 3' | -53.3 | NC_002794.1 | + | 115325 | 0.68 | 0.961808 |
Target: 5'- cGGUCG-CCGCGGCGUcCGGGcCGcUCGg -3' miRNA: 3'- -UUAGCaGGCGCUGCGaGCUU-GCaAGC- -5' |
|||||||
10702 | 3' | -53.3 | NC_002794.1 | + | 138958 | 0.68 | 0.961808 |
Target: 5'- --gCGUgCUGCGACGCggCGGACGggUUGg -3' miRNA: 3'- uuaGCA-GGCGCUGCGa-GCUUGCa-AGC- -5' |
|||||||
10702 | 3' | -53.3 | NC_002794.1 | + | 152915 | 0.68 | 0.961808 |
Target: 5'- cAUCGUCCGgauCGAgGCcCGGGCGUacaUCGa -3' miRNA: 3'- uUAGCAGGC---GCUgCGaGCUUGCA---AGC- -5' |
|||||||
10702 | 3' | -53.3 | NC_002794.1 | + | 13122 | 0.68 | 0.961808 |
Target: 5'- gGGUCG-CCGCGcggcuCGCUCGcGCGggUCGu -3' miRNA: 3'- -UUAGCaGGCGCu----GCGAGCuUGCa-AGC- -5' |
|||||||
10702 | 3' | -53.3 | NC_002794.1 | + | 50667 | 0.67 | 0.971196 |
Target: 5'- --gCGgCCGCGGCGCUCGccGCGaaUCGa -3' miRNA: 3'- uuaGCaGGCGCUGCGAGCu-UGCa-AGC- -5' |
|||||||
10702 | 3' | -53.3 | NC_002794.1 | + | 101986 | 0.67 | 0.971196 |
Target: 5'- cGAUCGgCCGCGACauGCUCucGCGgaccUCGg -3' miRNA: 3'- -UUAGCaGGCGCUG--CGAGcuUGCa---AGC- -5' |
|||||||
10702 | 3' | -53.3 | NC_002794.1 | + | 70216 | 0.67 | 0.971196 |
Target: 5'- -cUCGcCCG-GACGgUCGGGCGggCGg -3' miRNA: 3'- uuAGCaGGCgCUGCgAGCUUGCaaGC- -5' |
|||||||
10702 | 3' | -53.3 | NC_002794.1 | + | 191495 | 0.67 | 0.971478 |
Target: 5'- cGAUCGUCCGCcaccgagaggugccaGCGC-CGGGCG-UCGg -3' miRNA: 3'- -UUAGCAGGCGc--------------UGCGaGCUUGCaAGC- -5' |
|||||||
10702 | 3' | -53.3 | NC_002794.1 | + | 115891 | 0.67 | 0.973921 |
Target: 5'- --gCGUCCGCGgaGCGCg-GGGgGUUCGu -3' miRNA: 3'- uuaGCAGGCGC--UGCGagCUUgCAAGC- -5' |
|||||||
10702 | 3' | -53.3 | NC_002794.1 | + | 175291 | 0.67 | 0.976208 |
Target: 5'- -uUCGgaaCGUGACGCUCGAgguaacccacgagACGgUCGa -3' miRNA: 3'- uuAGCag-GCGCUGCGAGCU-------------UGCaAGC- -5' |
|||||||
10702 | 3' | -53.3 | NC_002794.1 | + | 21893 | 0.67 | 0.976453 |
Target: 5'- --gUGUCCGCGGCcuGCgUCGGugGUggCGg -3' miRNA: 3'- uuaGCAGGCGCUG--CG-AGCUugCAa-GC- -5' |
|||||||
10702 | 3' | -53.3 | NC_002794.1 | + | 65166 | 0.67 | 0.977414 |
Target: 5'- --cCGUCCGUGGCGC-CGAgaccggcgggugccgGCGaggUCGg -3' miRNA: 3'- uuaGCAGGCGCUGCGaGCU---------------UGCa--AGC- -5' |
|||||||
10702 | 3' | -53.3 | NC_002794.1 | + | 102444 | 0.67 | 0.9788 |
Target: 5'- --aUGUCCGagcuGACGCUCGAggagauGCGgcgcgUCGg -3' miRNA: 3'- uuaGCAGGCg---CUGCGAGCU------UGCa----AGC- -5' |
|||||||
10702 | 3' | -53.3 | NC_002794.1 | + | 22597 | 0.66 | 0.98097 |
Target: 5'- -cUCGgcacggUCGgGACGCUCGAGcCGaUCGg -3' miRNA: 3'- uuAGCa-----GGCgCUGCGAGCUU-GCaAGC- -5' |
|||||||
10702 | 3' | -53.3 | NC_002794.1 | + | 119506 | 0.66 | 0.982969 |
Target: 5'- gGGUCGUCgGCGGCGCg-GAGCcGgccgCGg -3' miRNA: 3'- -UUAGCAGgCGCUGCGagCUUG-Caa--GC- -5' |
|||||||
10702 | 3' | -53.3 | NC_002794.1 | + | 156847 | 0.66 | 0.982969 |
Target: 5'- gGGUCGgugCCGCGcguuccCGCUCGAgGCGccUUCGa -3' miRNA: 3'- -UUAGCa--GGCGCu-----GCGAGCU-UGC--AAGC- -5' |
|||||||
10702 | 3' | -53.3 | NC_002794.1 | + | 17449 | 0.66 | 0.982969 |
Target: 5'- -cUCGggcCCGCGACcgaGgUCGAAgGUUCGc -3' miRNA: 3'- uuAGCa--GGCGCUG---CgAGCUUgCAAGC- -5' |
|||||||
10702 | 3' | -53.3 | NC_002794.1 | + | 122015 | 0.66 | 0.982969 |
Target: 5'- cGUCGUCUucuuCGGCGC-CGGGCGUcUCGu -3' miRNA: 3'- uUAGCAGGc---GCUGCGaGCUUGCA-AGC- -5' |
|||||||
10702 | 3' | -53.3 | NC_002794.1 | + | 98972 | 0.66 | 0.986325 |
Target: 5'- --cCGUCgGCGGCGCcguggccUCGGugG-UCGg -3' miRNA: 3'- uuaGCAGgCGCUGCG-------AGCUugCaAGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home