Results 41 - 60 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10702 | 5' | -61.9 | NC_002794.1 | + | 1628 | 0.67 | 0.637782 |
Target: 5'- -cCGGCCuGauaCGGGGACCGgGGGCg- -3' miRNA: 3'- gaGCCGG-Cga-GCUCCUGGCgCUCGag -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 77038 | 0.68 | 0.628117 |
Target: 5'- gCUCGuccCCGCUCGugccgcGGACCGCGucccGCUUu -3' miRNA: 3'- -GAGCc--GGCGAGCu-----CCUGGCGCu---CGAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 125764 | 0.68 | 0.628117 |
Target: 5'- -cCGGCgGCUCGccacccGGCUGCGAGCg- -3' miRNA: 3'- gaGCCGgCGAGCuc----CUGGCGCUCGag -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 137155 | 0.68 | 0.628117 |
Target: 5'- -cCGGCCGCccUCGGucccGGCCGCucGCUCg -3' miRNA: 3'- gaGCCGGCG--AGCUc---CUGGCGcuCGAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 108178 | 0.68 | 0.628117 |
Target: 5'- ---cGCCGCgacgCGcGGACUGCGAGCg- -3' miRNA: 3'- gagcCGGCGa---GCuCCUGGCGCUCGag -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 105548 | 0.68 | 0.618456 |
Target: 5'- -gCGGCgGCUCGggcgaacggauaGGGugCGCguagagcagGAGCUCg -3' miRNA: 3'- gaGCCGgCGAGC------------UCCugGCG---------CUCGAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 178326 | 0.68 | 0.608803 |
Target: 5'- cCUCGuagaGCCGCUCuGGuGACCGCGuGGCg- -3' miRNA: 3'- -GAGC----CGGCGAGcUC-CUGGCGC-UCGag -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 104894 | 0.68 | 0.608803 |
Target: 5'- -cCGGCCGC--GAGGcGCCGUGcuGCUCg -3' miRNA: 3'- gaGCCGGCGagCUCC-UGGCGCu-CGAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 84758 | 0.68 | 0.603018 |
Target: 5'- -cCGGCCGCgaGAGGGCCGUccgaggcccggcccGGCUCu -3' miRNA: 3'- gaGCCGGCGagCUCCUGGCGc-------------UCGAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 100529 | 0.68 | 0.599166 |
Target: 5'- gUCGGCgGCacCGAGGAgCaGCGGGCg- -3' miRNA: 3'- gAGCCGgCGa-GCUCCUgG-CGCUCGag -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 71304 | 0.68 | 0.599166 |
Target: 5'- -cCGGCgCGCUCG-GG-CgGCGAGCg- -3' miRNA: 3'- gaGCCG-GCGAGCuCCuGgCGCUCGag -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 66950 | 0.68 | 0.599166 |
Target: 5'- --aGGCC-CUCGAGGcCgGCGAgucGCUCg -3' miRNA: 3'- gagCCGGcGAGCUCCuGgCGCU---CGAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 145472 | 0.68 | 0.58955 |
Target: 5'- -gCGGUCGCcgaaggcCGAGGAUCGCGAGgaUg -3' miRNA: 3'- gaGCCGGCGa------GCUCCUGGCGCUCgaG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 90661 | 0.68 | 0.58955 |
Target: 5'- gCUCGcGCCGUUgGGGccGGCCGCGuGGCUg -3' miRNA: 3'- -GAGC-CGGCGAgCUC--CUGGCGC-UCGAg -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 22624 | 0.68 | 0.58667 |
Target: 5'- aUCgGGCCGCUCGAGGcgcucggaccgcugAUCGUGAuGCg- -3' miRNA: 3'- gAG-CCGGCGAGCUCC--------------UGGCGCU-CGag -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 44301 | 0.68 | 0.579962 |
Target: 5'- --gGGCCgGCgaggCGGGGAgcgaCCGCGAGCg- -3' miRNA: 3'- gagCCGG-CGa---GCUCCU----GGCGCUCGag -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 86786 | 0.68 | 0.574225 |
Target: 5'- -cCGGCCGCUCcggaaccgaGAccuaggggagauccaGGGCCGCGAcCUCg -3' miRNA: 3'- gaGCCGGCGAG---------CU---------------CCUGGCGCUcGAG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 102651 | 0.68 | 0.570408 |
Target: 5'- -gCGGCgCGCUCgGAGGAgCUGCcGAGCg- -3' miRNA: 3'- gaGCCG-GCGAG-CUCCU-GGCG-CUCGag -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 147134 | 0.69 | 0.560892 |
Target: 5'- -aCGGCgGUUCGAgacggccccgGGGCCGCGAGggCc -3' miRNA: 3'- gaGCCGgCGAGCU----------CCUGGCGCUCgaG- -5' |
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10702 | 5' | -61.9 | NC_002794.1 | + | 121979 | 0.69 | 0.560892 |
Target: 5'- gCUCGGucCCGC-CGAGcgcGGCCGgGAGCUg -3' miRNA: 3'- -GAGCC--GGCGaGCUC---CUGGCgCUCGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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