miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10702 5' -61.9 NC_002794.1 + 48633 0.75 0.250049
Target:  5'- -gCGGCCG-UCGGGGcCCGCGAGC-Cg -3'
miRNA:   3'- gaGCCGGCgAGCUCCuGGCGCUCGaG- -5'
10702 5' -61.9 NC_002794.1 + 51989 0.69 0.551421
Target:  5'- gCUCGGCCGCUacCGAGagcaguaccuGAUCuaCGGGCUCg -3'
miRNA:   3'- -GAGCCGGCGA--GCUC----------CUGGc-GCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 52794 0.69 0.514074
Target:  5'- gCUCGaGCCGCUCGucGGACgccgGC-AGCUCg -3'
miRNA:   3'- -GAGC-CGGCGAGCu-CCUGg---CGcUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 55325 0.67 0.685907
Target:  5'- --gGGCgGCUucCGAGGACC-CGGGgUCg -3'
miRNA:   3'- gagCCGgCGA--GCUCCUGGcGCUCgAG- -5'
10702 5' -61.9 NC_002794.1 + 57758 0.79 0.149077
Target:  5'- gCUCGacCCGCUCGAGcaGACCGuCGAGCUCa -3'
miRNA:   3'- -GAGCc-GGCGAGCUC--CUGGC-GCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 58834 0.66 0.742256
Target:  5'- -cCuGCCGCgCGAGGACgccgaCGUGcAGCUCg -3'
miRNA:   3'- gaGcCGGCGaGCUCCUG-----GCGC-UCGAG- -5'
10702 5' -61.9 NC_002794.1 + 59219 0.71 0.442835
Target:  5'- uCUCGGCCGC-----GGCgCGCGAGCUCu -3'
miRNA:   3'- -GAGCCGGCGagcucCUG-GCGCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 59291 0.66 0.723734
Target:  5'- gCUC-GCCGCUCGAc-GCCGCGcAGCg- -3'
miRNA:   3'- -GAGcCGGCGAGCUccUGGCGC-UCGag -5'
10702 5' -61.9 NC_002794.1 + 66950 0.68 0.599166
Target:  5'- --aGGCC-CUCGAGGcCgGCGAgucGCUCg -3'
miRNA:   3'- gagCCGGcGAGCUCCuGgCGCU---CGAG- -5'
10702 5' -61.9 NC_002794.1 + 67946 0.67 0.685907
Target:  5'- -aUGGCCuCgacCGAGGACgGCGGGCcCa -3'
miRNA:   3'- gaGCCGGcGa--GCUCCUGgCGCUCGaG- -5'
10702 5' -61.9 NC_002794.1 + 71304 0.68 0.599166
Target:  5'- -cCGGCgCGCUCG-GG-CgGCGAGCg- -3'
miRNA:   3'- gaGCCG-GCGAGCuCCuGgCGCUCGag -5'
10702 5' -61.9 NC_002794.1 + 71732 0.67 0.676332
Target:  5'- gUUGGCCGCcacgcCGaAGGccGCCGCcGGCUCu -3'
miRNA:   3'- gAGCCGGCGa----GC-UCC--UGGCGcUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 77038 0.68 0.628117
Target:  5'- gCUCGuccCCGCUCGugccgcGGACCGCGucccGCUUu -3'
miRNA:   3'- -GAGCc--GGCGAGCu-----CCUGGCGCu---CGAG- -5'
10702 5' -61.9 NC_002794.1 + 78147 0.74 0.279739
Target:  5'- gCUCGagacGCCGCUCGA--GCCGCGAGCg- -3'
miRNA:   3'- -GAGC----CGGCGAGCUccUGGCGCUCGag -5'
10702 5' -61.9 NC_002794.1 + 80902 0.66 0.733034
Target:  5'- -gCGGCC-CUCGAcGAcCCGCGcccGCUCg -3'
miRNA:   3'- gaGCCGGcGAGCUcCU-GGCGCu--CGAG- -5'
10702 5' -61.9 NC_002794.1 + 82820 0.71 0.425902
Target:  5'- -gCGGCuCGCUCGAGaGACgcacggcgagCGCGAGCg- -3'
miRNA:   3'- gaGCCG-GCGAGCUC-CUG----------GCGCUCGag -5'
10702 5' -61.9 NC_002794.1 + 84758 0.68 0.603018
Target:  5'- -cCGGCCGCgaGAGGGCCGUccgaggcccggcccGGCUCu -3'
miRNA:   3'- gaGCCGGCGagCUCCUGGCGc-------------UCGAG- -5'
10702 5' -61.9 NC_002794.1 + 84981 0.66 0.733034
Target:  5'- -cCGGCCGCgaaaccccaCGAGcccGACCGcCGcGCUCg -3'
miRNA:   3'- gaGCCGGCGa--------GCUC---CUGGC-GCuCGAG- -5'
10702 5' -61.9 NC_002794.1 + 85934 0.66 0.727463
Target:  5'- gUUGGCCggGCUCGgaaccgacccggaacGGGGCCGCGGcccuCUCa -3'
miRNA:   3'- gAGCCGG--CGAGC---------------UCCUGGCGCUc---GAG- -5'
10702 5' -61.9 NC_002794.1 + 86786 0.68 0.574225
Target:  5'- -cCGGCCGCUCcggaaccgaGAccuaggggagauccaGGGCCGCGAcCUCg -3'
miRNA:   3'- gaGCCGGCGAG---------CU---------------CCUGGCGCUcGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.