miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10702 5' -61.9 NC_002794.1 + 14 0.79 0.149077
Target:  5'- -gCGGCCGCgaacacgaaaaCGAGGccGCCGCGGGCUCu -3'
miRNA:   3'- gaGCCGGCGa----------GCUCC--UGGCGCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 591 0.66 0.723734
Target:  5'- cCUCGGuCCGUUCGuGG-CCGgGuGCg- -3'
miRNA:   3'- -GAGCC-GGCGAGCuCCuGGCgCuCGag -5'
10702 5' -61.9 NC_002794.1 + 1628 0.67 0.637782
Target:  5'- -cCGGCCuGauaCGGGGACCGgGGGCg- -3'
miRNA:   3'- gaGCCGG-Cga-GCUCCUGGCgCUCGag -5'
10702 5' -61.9 NC_002794.1 + 1691 0.67 0.637782
Target:  5'- -cCGGCCuGauaCGGGGACCGgGGGCg- -3'
miRNA:   3'- gaGCCGG-Cga-GCUCCUGGCgCUCGag -5'
10702 5' -61.9 NC_002794.1 + 10326 0.7 0.502155
Target:  5'- aCUCGGCCG-UCGucGGcGCCGCGAccgggugacggacuGCUCg -3'
miRNA:   3'- -GAGCCGGCgAGCu-CC-UGGCGCU--------------CGAG- -5'
10702 5' -61.9 NC_002794.1 + 11527 0.72 0.362217
Target:  5'- aUCGaGCUGCgggcgacCGAGGACCGCG-GCUg -3'
miRNA:   3'- gAGC-CGGCGa------GCUCCUGGCGCuCGAg -5'
10702 5' -61.9 NC_002794.1 + 12803 0.69 0.52332
Target:  5'- aUCGGCCcggggcccguGCUCGAGGucuACCcCGAGCa- -3'
miRNA:   3'- gAGCCGG----------CGAGCUCC---UGGcGCUCGag -5'
10702 5' -61.9 NC_002794.1 + 16712 0.66 0.742256
Target:  5'- gCUC-GCCGUcCGAGGAguCUGCGccGGCUCc -3'
miRNA:   3'- -GAGcCGGCGaGCUCCU--GGCGC--UCGAG- -5'
10702 5' -61.9 NC_002794.1 + 17991 0.69 0.512233
Target:  5'- -aCGGCCGCcggcgaguacuaCGAGGACgGCGuGUUCc -3'
miRNA:   3'- gaGCCGGCGa-----------GCUCCUGgCGCuCGAG- -5'
10702 5' -61.9 NC_002794.1 + 19715 0.71 0.425902
Target:  5'- -cCGGCCcgauCUCGAucGACCGCGAGUUCc -3'
miRNA:   3'- gaGCCGGc---GAGCUc-CUGGCGCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 22624 0.68 0.58667
Target:  5'- aUCgGGCCGCUCGAGGcgcucggaccgcugAUCGUGAuGCg- -3'
miRNA:   3'- gAG-CCGGCGAGCUCC--------------UGGCGCU-CGag -5'
10702 5' -61.9 NC_002794.1 + 29217 0.67 0.637782
Target:  5'- gUCGGCgGC-CGucGGCCGCcGAGCa- -3'
miRNA:   3'- gAGCCGgCGaGCucCUGGCG-CUCGag -5'
10702 5' -61.9 NC_002794.1 + 34281 0.67 0.657093
Target:  5'- -gCGGCCaGCgCcAGcGACCGgGAGCUCu -3'
miRNA:   3'- gaGCCGG-CGaGcUC-CUGGCgCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 35977 0.66 0.69449
Target:  5'- --gGGcCCGCUCGcGGACCcgguuuuauugucGCgGGGCUCg -3'
miRNA:   3'- gagCC-GGCGAGCuCCUGG-------------CG-CUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 37776 0.66 0.733034
Target:  5'- -gCGGCCGUcgUCGucGGCCGCaGGCg- -3'
miRNA:   3'- gaGCCGGCG--AGCucCUGGCGcUCGag -5'
10702 5' -61.9 NC_002794.1 + 40501 0.66 0.70493
Target:  5'- gCUC-GCCGCUCGAGucacGGCCGcCGAcGCg- -3'
miRNA:   3'- -GAGcCGGCGAGCUC----CUGGC-GCU-CGag -5'
10702 5' -61.9 NC_002794.1 + 42604 0.66 0.714363
Target:  5'- -gCGGCCGggagcgggcucuCUCGAcGACCGCGcuCUCa -3'
miRNA:   3'- gaGCCGGC------------GAGCUcCUGGCGCucGAG- -5'
10702 5' -61.9 NC_002794.1 + 44220 0.7 0.468929
Target:  5'- gCUCGGgCGC-CGAGGGCUcggugccggGCG-GCUCg -3'
miRNA:   3'- -GAGCCgGCGaGCUCCUGG---------CGCuCGAG- -5'
10702 5' -61.9 NC_002794.1 + 44265 0.72 0.385312
Target:  5'- gCUCGGCCGC-CGGGGACgGagGAGUcCg -3'
miRNA:   3'- -GAGCCGGCGaGCUCCUGgCg-CUCGaG- -5'
10702 5' -61.9 NC_002794.1 + 44301 0.68 0.579962
Target:  5'- --gGGCCgGCgaggCGGGGAgcgaCCGCGAGCg- -3'
miRNA:   3'- gagCCGG-CGa---GCUCCU----GGCGCUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.