miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10702 5' -61.9 NC_002794.1 + 191811 1.09 0.001155
Target:  5'- gCUCGGCCGCUCGAGGACCGCGAGCUCg -3'
miRNA:   3'- -GAGCCGGCGAGCUCCUGGCGCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 114896 0.87 0.043579
Target:  5'- gCUCGGuCCGCUCGAGGAgCGCGuguAGCUCg -3'
miRNA:   3'- -GAGCC-GGCGAGCUCCUgGCGC---UCGAG- -5'
10702 5' -61.9 NC_002794.1 + 57758 0.79 0.149077
Target:  5'- gCUCGacCCGCUCGAGcaGACCGuCGAGCUCa -3'
miRNA:   3'- -GAGCc-GGCGAGCUC--CUGGC-GCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 14 0.79 0.149077
Target:  5'- -gCGGCCGCgaacacgaaaaCGAGGccGCCGCGGGCUCu -3'
miRNA:   3'- gaGCCGGCGa----------GCUCC--UGGCGCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 48633 0.75 0.250049
Target:  5'- -gCGGCCG-UCGGGGcCCGCGAGC-Cg -3'
miRNA:   3'- gaGCCGGCgAGCUCCuGGCGCUCGaG- -5'
10702 5' -61.9 NC_002794.1 + 187839 0.74 0.273584
Target:  5'- gCUCGGCgCGC-CGAGGgcucugcccaGCCGCGcgcGGCUCg -3'
miRNA:   3'- -GAGCCG-GCGaGCUCC----------UGGCGC---UCGAG- -5'
10702 5' -61.9 NC_002794.1 + 78147 0.74 0.279739
Target:  5'- gCUCGagacGCCGCUCGA--GCCGCGAGCg- -3'
miRNA:   3'- -GAGC----CGGCGAGCUccUGGCGCUCGag -5'
10702 5' -61.9 NC_002794.1 + 121322 0.74 0.298862
Target:  5'- gUUGGCC-CUCGAGGcGCCGCGcGGCUg -3'
miRNA:   3'- gAGCCGGcGAGCUCC-UGGCGC-UCGAg -5'
10702 5' -61.9 NC_002794.1 + 113926 0.74 0.305458
Target:  5'- gUCGGCCGCcgaggCGAcGGGCCGCugccGGGCUUc -3'
miRNA:   3'- gAGCCGGCGa----GCU-CCUGGCG----CUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 104424 0.73 0.340102
Target:  5'- cCUCGGCCGC-CGGcccGGacgccGCCGCGGGCg- -3'
miRNA:   3'- -GAGCCGGCGaGCU---CC-----UGGCGCUCGag -5'
10702 5' -61.9 NC_002794.1 + 11527 0.72 0.362217
Target:  5'- aUCGaGCUGCgggcgacCGAGGACCGCG-GCUg -3'
miRNA:   3'- gAGC-CGGCGa------GCUCCUGGCGCuCGAg -5'
10702 5' -61.9 NC_002794.1 + 150588 0.72 0.369808
Target:  5'- cCUCGGgCGCcCGAGGACgGcCGGGCg- -3'
miRNA:   3'- -GAGCCgGCGaGCUCCUGgC-GCUCGag -5'
10702 5' -61.9 NC_002794.1 + 44265 0.72 0.385312
Target:  5'- gCUCGGCCGC-CGGGGACgGagGAGUcCg -3'
miRNA:   3'- -GAGCCGGCGaGCUCCUGgCg-CUCGaG- -5'
10702 5' -61.9 NC_002794.1 + 146687 0.72 0.40124
Target:  5'- uCUCGG-CGCUCGAGGccgACUGCggGAGCUg -3'
miRNA:   3'- -GAGCCgGCGAGCUCC---UGGCG--CUCGAg -5'
10702 5' -61.9 NC_002794.1 + 143284 0.71 0.409359
Target:  5'- -cCGGCCGCUCGGGGuCgGgCGGGUg- -3'
miRNA:   3'- gaGCCGGCGAGCUCCuGgC-GCUCGag -5'
10702 5' -61.9 NC_002794.1 + 143327 0.71 0.417581
Target:  5'- gUCGGUCGCgugCucGGGCaGCGGGCUCg -3'
miRNA:   3'- gAGCCGGCGa--GcuCCUGgCGCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 121381 0.71 0.417581
Target:  5'- -cCGGCCGC-CGccGGGACCGCGgccGGCg- -3'
miRNA:   3'- gaGCCGGCGaGC--UCCUGGCGC---UCGag -5'
10702 5' -61.9 NC_002794.1 + 145855 0.71 0.417581
Target:  5'- gCUCGacgaGCCGC-CGAGGGCCGCGAcCg- -3'
miRNA:   3'- -GAGC----CGGCGaGCUCCUGGCGCUcGag -5'
10702 5' -61.9 NC_002794.1 + 19715 0.71 0.425902
Target:  5'- -cCGGCCcgauCUCGAucGACCGCGAGUUCc -3'
miRNA:   3'- gaGCCGGc---GAGCUc-CUGGCGCUCGAG- -5'
10702 5' -61.9 NC_002794.1 + 82820 0.71 0.425902
Target:  5'- -gCGGCuCGCUCGAGaGACgcacggcgagCGCGAGCg- -3'
miRNA:   3'- gaGCCG-GCGAGCUC-CUG----------GCGCUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.