Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 10703 | 3' | -61.4 | NC_002794.1 | + | 50731 | 0.72 | 0.365698 |
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Target: 5'- --cGCCCGGGGCGgCCGccucGACUCgcucguccgccccGGGCg -3' miRNA: 3'- caaCGGGCCCCGCgGGU----CUGAG-------------UCUG- -5' |
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| 10703 | 3' | -61.4 | NC_002794.1 | + | 184485 | 0.72 | 0.358817 |
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Target: 5'- --cGCgCGGGGC-CCCGGACgccCGGGCg -3' miRNA: 3'- caaCGgGCCCCGcGGGUCUGa--GUCUG- -5' |
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| 10703 | 3' | -61.4 | NC_002794.1 | + | 105289 | 0.72 | 0.351278 |
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Target: 5'- cGUUGCUCGGGGU-CCCGG-CUCAGcaGCa -3' miRNA: 3'- -CAACGGGCCCCGcGGGUCuGAGUC--UG- -5' |
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| 10703 | 3' | -61.4 | NC_002794.1 | + | 48635 | 0.73 | 0.33654 |
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Target: 5'- --gGCCguCGGGGCccgcgagccGCCgCAGACUCAGGCc -3' miRNA: 3'- caaCGG--GCCCCG---------CGG-GUCUGAGUCUG- -5' |
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| 10703 | 3' | -61.4 | NC_002794.1 | + | 150584 | 0.73 | 0.329342 |
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Target: 5'- -cUGCCCucGGGCGCCCgaGGACggcCGGGCg -3' miRNA: 3'- caACGGGc-CCCGCGGG--UCUGa--GUCUG- -5' |
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| 10703 | 3' | -61.4 | NC_002794.1 | + | 106411 | 0.74 | 0.269695 |
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Target: 5'- ---cCCCGGcGGCGCCgGGGCUCAuGGCg -3' miRNA: 3'- caacGGGCC-CCGCGGgUCUGAGU-CUG- -5' |
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| 10703 | 3' | -61.4 | NC_002794.1 | + | 126684 | 0.76 | 0.217524 |
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Target: 5'- --gGCCCgaaucggggagggaGGGGCGCCgCGGACUCGGGg -3' miRNA: 3'- caaCGGG--------------CCCCGCGG-GUCUGAGUCUg -5' |
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| 10703 | 3' | -61.4 | NC_002794.1 | + | 191048 | 1.09 | 0.001075 |
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Target: 5'- aGUUGCCCGGGGCGCCCAGACUCAGACa -3' miRNA: 3'- -CAACGGGCCCCGCGGGUCUGAGUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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