miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10703 3' -61.4 NC_002794.1 + 191048 1.09 0.001075
Target:  5'- aGUUGCCCGGGGCGCCCAGACUCAGACa -3'
miRNA:   3'- -CAACGGGCCCCGCGGGUCUGAGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 126684 0.76 0.217524
Target:  5'- --gGCCCgaaucggggagggaGGGGCGCCgCGGACUCGGGg -3'
miRNA:   3'- caaCGGG--------------CCCCGCGG-GUCUGAGUCUg -5'
10703 3' -61.4 NC_002794.1 + 106411 0.74 0.269695
Target:  5'- ---cCCCGGcGGCGCCgGGGCUCAuGGCg -3'
miRNA:   3'- caacGGGCC-CCGCGGgUCUGAGU-CUG- -5'
10703 3' -61.4 NC_002794.1 + 150584 0.73 0.329342
Target:  5'- -cUGCCCucGGGCGCCCgaGGACggcCGGGCg -3'
miRNA:   3'- caACGGGc-CCCGCGGG--UCUGa--GUCUG- -5'
10703 3' -61.4 NC_002794.1 + 48635 0.73 0.33654
Target:  5'- --gGCCguCGGGGCccgcgagccGCCgCAGACUCAGGCc -3'
miRNA:   3'- caaCGG--GCCCCG---------CGG-GUCUGAGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 105289 0.72 0.351278
Target:  5'- cGUUGCUCGGGGU-CCCGG-CUCAGcaGCa -3'
miRNA:   3'- -CAACGGGCCCCGcGGGUCuGAGUC--UG- -5'
10703 3' -61.4 NC_002794.1 + 184485 0.72 0.358817
Target:  5'- --cGCgCGGGGC-CCCGGACgccCGGGCg -3'
miRNA:   3'- caaCGgGCCCCGcGGGUCUGa--GUCUG- -5'
10703 3' -61.4 NC_002794.1 + 50731 0.72 0.365698
Target:  5'- --cGCCCGGGGCGgCCGccucGACUCgcucguccgccccGGGCg -3'
miRNA:   3'- caaCGGGCCCCGCgGGU----CUGAG-------------UCUG- -5'
10703 3' -61.4 NC_002794.1 + 115871 0.72 0.382105
Target:  5'- aGggGUCCGGGGCGUCCgGGGCguccgCGGAg -3'
miRNA:   3'- -CaaCGGGCCCCGCGGG-UCUGa----GUCUg -5'
10703 3' -61.4 NC_002794.1 + 66810 0.72 0.390088
Target:  5'- --cGCCCGGcaucgucagGGCGCCCGgcgcGACUcCGGGCg -3'
miRNA:   3'- caaCGGGCC---------CCGCGGGU----CUGA-GUCUG- -5'
10703 3' -61.4 NC_002794.1 + 70295 0.71 0.414682
Target:  5'- --gGCCgGGGGgGCCCGGGCgcgaAGAg -3'
miRNA:   3'- caaCGGgCCCCgCGGGUCUGag--UCUg -5'
10703 3' -61.4 NC_002794.1 + 23617 0.71 0.423089
Target:  5'- ---cCCCGcGGGCGCCCGGACgcgCGGcCc -3'
miRNA:   3'- caacGGGC-CCCGCGGGUCUGa--GUCuG- -5'
10703 3' -61.4 NC_002794.1 + 24431 0.71 0.431597
Target:  5'- -aUGCUCGGGGCGCCCcuguauauACaUAGACa -3'
miRNA:   3'- caACGGGCCCCGCGGGuc------UGaGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 139342 0.71 0.431597
Target:  5'- -gUGaCCGGGGCcaggcCCCAGAC-CAGGCa -3'
miRNA:   3'- caACgGGCCCCGc----GGGUCUGaGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 119097 0.71 0.431597
Target:  5'- gGUUGCUgGuGGGCGUCCAGAuCggGGACg -3'
miRNA:   3'- -CAACGGgC-CCCGCGGGUCU-GagUCUG- -5'
10703 3' -61.4 NC_002794.1 + 82696 0.7 0.457709
Target:  5'- --cGCCCGGcGCGCCgAGACgcgccgaGGACg -3'
miRNA:   3'- caaCGGGCCcCGCGGgUCUGag-----UCUG- -5'
10703 3' -61.4 NC_002794.1 + 35644 0.7 0.466599
Target:  5'- --aGaCCCGGGacggGCGCCCGGuCUCcGACg -3'
miRNA:   3'- caaC-GGGCCC----CGCGGGUCuGAGuCUG- -5'
10703 3' -61.4 NC_002794.1 + 96778 0.7 0.475577
Target:  5'- --cGCCCGGGGUccuCCUGGACUUGGuACg -3'
miRNA:   3'- caaCGGGCCCCGc--GGGUCUGAGUC-UG- -5'
10703 3' -61.4 NC_002794.1 + 178808 0.7 0.484641
Target:  5'- --gGCCCGGGGgGaCCgGGcACUCGGGu -3'
miRNA:   3'- caaCGGGCCCCgC-GGgUC-UGAGUCUg -5'
10703 3' -61.4 NC_002794.1 + 143275 0.7 0.493787
Target:  5'- --gGCCCGGcgccGGcCGCUCGGGgUCGGGCg -3'
miRNA:   3'- caaCGGGCC----CC-GCGGGUCUgAGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.