miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10703 3' -61.4 NC_002794.1 + 17966 0.66 0.715424
Target:  5'- --cGCCCGGgccgugagccuGGCGCCCAcGGCcgCcGGCg -3'
miRNA:   3'- caaCGGGCC-----------CCGCGGGU-CUGa-GuCUG- -5'
10703 3' -61.4 NC_002794.1 + 19527 0.66 0.724923
Target:  5'- --aGCgCCGGcgcGGCGCggcccgCCGGugUCGGACc -3'
miRNA:   3'- caaCG-GGCC---CCGCG------GGUCugAGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 23617 0.71 0.423089
Target:  5'- ---cCCCGcGGGCGCCCGGACgcgCGGcCc -3'
miRNA:   3'- caacGGGC-CCCGCGGGUCUGa--GUCuG- -5'
10703 3' -61.4 NC_002794.1 + 24431 0.71 0.431597
Target:  5'- -aUGCUCGGGGCGCCCcuguauauACaUAGACa -3'
miRNA:   3'- caACGGGCCCCGCGGGuc------UGaGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 35644 0.7 0.466599
Target:  5'- --aGaCCCGGGacggGCGCCCGGuCUCcGACg -3'
miRNA:   3'- caaC-GGGCCC----CGCGGGUCuGAGuCUG- -5'
10703 3' -61.4 NC_002794.1 + 37335 0.66 0.722081
Target:  5'- uGggGCCCGggcggcagcaggucGGGC-CCCAGguagucgaaGCUCGGGCg -3'
miRNA:   3'- -CaaCGGGC--------------CCCGcGGGUC---------UGAGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 44214 0.66 0.724923
Target:  5'- --cGUCCGGcucgGGCGCCgaGGGCUCGGuGCc -3'
miRNA:   3'- caaCGGGCC----CCGCGGg-UCUGAGUC-UG- -5'
10703 3' -61.4 NC_002794.1 + 44498 0.66 0.724923
Target:  5'- cGUUGUCUcacGGCgGCCCAGAC-CGGGCc -3'
miRNA:   3'- -CAACGGGcc-CCG-CGGGUCUGaGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 48635 0.73 0.33654
Target:  5'- --gGCCguCGGGGCccgcgagccGCCgCAGACUCAGGCc -3'
miRNA:   3'- caaCGG--GCCCCG---------CGG-GUCUGAGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 50731 0.72 0.365698
Target:  5'- --cGCCCGGGGCGgCCGccucGACUCgcucguccgccccGGGCg -3'
miRNA:   3'- caaCGGGCCCCGCgGGU----CUGAG-------------UCUG- -5'
10703 3' -61.4 NC_002794.1 + 50805 0.69 0.558799
Target:  5'- --cGCCCGGcgucgggcgcuccGGCGCCCccgccCUCGGGCg -3'
miRNA:   3'- caaCGGGCC-------------CCGCGGGucu--GAGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 66810 0.72 0.390088
Target:  5'- --cGCCCGGcaucgucagGGCGCCCGgcgcGACUcCGGGCg -3'
miRNA:   3'- caaCGGGCC---------CCGCGGGU----CUGA-GUCUG- -5'
10703 3' -61.4 NC_002794.1 + 68784 0.69 0.559761
Target:  5'- --cGCCCGGcucucGCGCCCcGGCUaacaGGACg -3'
miRNA:   3'- caaCGGGCCc----CGCGGGuCUGAg---UCUG- -5'
10703 3' -61.4 NC_002794.1 + 70295 0.71 0.414682
Target:  5'- --gGCCgGGGGgGCCCGGGCgcgaAGAg -3'
miRNA:   3'- caaCGGgCCCCgCGGGUCUGag--UCUg -5'
10703 3' -61.4 NC_002794.1 + 82188 0.67 0.637752
Target:  5'- --aGCCCGGGcgccccgaGCGCCCGGcACUCc--- -3'
miRNA:   3'- caaCGGGCCC--------CGCGGGUC-UGAGucug -5'
10703 3' -61.4 NC_002794.1 + 82696 0.7 0.457709
Target:  5'- --cGCCCGGcGCGCCgAGACgcgccgaGGACg -3'
miRNA:   3'- caaCGGGCCcCGCGGgUCUGag-----UCUG- -5'
10703 3' -61.4 NC_002794.1 + 85020 0.66 0.734348
Target:  5'- -gUGCCCcGGGCccacGCUCGGGugcCUCGGGCc -3'
miRNA:   3'- caACGGGcCCCG----CGGGUCU---GAGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 86203 0.68 0.588824
Target:  5'- -aUGCuCCGGGccGCGCCC-GAC-CGGAUg -3'
miRNA:   3'- caACG-GGCCC--CGCGGGuCUGaGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 86347 0.68 0.588824
Target:  5'- -aUGCuCCGGGccGCGCCC-GAC-CGGAUg -3'
miRNA:   3'- caACG-GGCCC--CGCGGGuCUGaGUCUG- -5'
10703 3' -61.4 NC_002794.1 + 86395 0.68 0.588824
Target:  5'- -aUGCuCCGGGccGCGCCC-GAC-CGGAUg -3'
miRNA:   3'- caACG-GGCCC--CGCGGGuCUGaGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.