miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10703 5' -54 NC_002794.1 + 191083 1.11 0.005396
Target:  5'- gCCGCCCGGUCCAGAUACGUGAACAGAc -3'
miRNA:   3'- -GGCGGGCCAGGUCUAUGCACUUGUCU- -5'
10703 5' -54 NC_002794.1 + 127685 0.76 0.605114
Target:  5'- -aGCCCGGUCgGGGcgACGUGggUGGGa -3'
miRNA:   3'- ggCGGGCCAGgUCUa-UGCACuuGUCU- -5'
10703 5' -54 NC_002794.1 + 149343 0.75 0.635298
Target:  5'- aCCGgCCGGggUCgCGGggGCGUGGACGGAg -3'
miRNA:   3'- -GGCgGGCC--AG-GUCuaUGCACUUGUCU- -5'
10703 5' -54 NC_002794.1 + 77782 0.74 0.705269
Target:  5'- cCCGCaCGGUCCAGAU-CGUGcAGcCGGAg -3'
miRNA:   3'- -GGCGgGCCAGGUCUAuGCAC-UU-GUCU- -5'
10703 5' -54 NC_002794.1 + 48566 0.74 0.715093
Target:  5'- gCCGCCC-GUCCAGAUGgGcGAGcCGGAg -3'
miRNA:   3'- -GGCGGGcCAGGUCUAUgCaCUU-GUCU- -5'
10703 5' -54 NC_002794.1 + 128681 0.73 0.74412
Target:  5'- aUCGCCgcggCGGUCCGGAggcuCG-GAACAGAc -3'
miRNA:   3'- -GGCGG----GCCAGGUCUau--GCaCUUGUCU- -5'
10703 5' -54 NC_002794.1 + 2018 0.71 0.860122
Target:  5'- gCGCCCgccggccuuauacggGGUCCGGggGCGUGuuccucgccaaAACAGAg -3'
miRNA:   3'- gGCGGG---------------CCAGGUCuaUGCAC-----------UUGUCU- -5'
10703 5' -54 NC_002794.1 + 71077 0.71 0.864605
Target:  5'- gCCGCCgGGUCCAGAc----GAACAGc -3'
miRNA:   3'- -GGCGGgCCAGGUCUaugcaCUUGUCu -5'
10703 5' -54 NC_002794.1 + 69832 0.71 0.866819
Target:  5'- uCCGCCCGGUCCGcuggcucaccgccuCGcGAACAGGc -3'
miRNA:   3'- -GGCGGGCCAGGUcuau----------GCaCUUGUCU- -5'
10703 5' -54 NC_002794.1 + 15321 0.7 0.871913
Target:  5'- cCCGCaggugaCGuGUCCGGAcgGCGUGGcCAGAu -3'
miRNA:   3'- -GGCGg-----GC-CAGGUCUa-UGCACUuGUCU- -5'
10703 5' -54 NC_002794.1 + 154361 0.7 0.89257
Target:  5'- cCCGCgCGGUCCAGGccgcgGCGgcGGCGGGc -3'
miRNA:   3'- -GGCGgGCCAGGUCUa----UGCacUUGUCU- -5'
10703 5' -54 NC_002794.1 + 119091 0.69 0.922006
Target:  5'- gCGCCCGGuugcuggugggcgUCCAGAU-CGggGAcGCAGAa -3'
miRNA:   3'- gGCGGGCC-------------AGGUCUAuGCa-CU-UGUCU- -5'
10703 5' -54 NC_002794.1 + 130433 0.69 0.922549
Target:  5'- gCCGUCUGGUCCAGGcgucCGUGuuggGCGGc -3'
miRNA:   3'- -GGCGGGCCAGGUCUau--GCACu---UGUCu -5'
10703 5' -54 NC_002794.1 + 104454 0.69 0.922549
Target:  5'- gCgGCCCGaGcCCGGGcgGCGUGuGCAGGa -3'
miRNA:   3'- -GgCGGGC-CaGGUCUa-UGCACuUGUCU- -5'
10703 5' -54 NC_002794.1 + 80405 0.69 0.927857
Target:  5'- cUCGCCgCGGcCCAGGUgGCGccGGGCGGGg -3'
miRNA:   3'- -GGCGG-GCCaGGUCUA-UGCa-CUUGUCU- -5'
10703 5' -54 NC_002794.1 + 71274 0.69 0.932932
Target:  5'- uCCGCgCGGUCCcGAUACGgaaAAUAGc -3'
miRNA:   3'- -GGCGgGCCAGGuCUAUGCac-UUGUCu -5'
10703 5' -54 NC_002794.1 + 43855 0.68 0.942392
Target:  5'- cCCGCUCGGcCCGGGgcACGUaGACGGu -3'
miRNA:   3'- -GGCGGGCCaGGUCUa-UGCAcUUGUCu -5'
10703 5' -54 NC_002794.1 + 195359 0.68 0.946779
Target:  5'- aCGCCCGGaCCAGGgacucguacUGCGcGAACGa- -3'
miRNA:   3'- gGCGGGCCaGGUCU---------AUGCaCUUGUcu -5'
10703 5' -54 NC_002794.1 + 143528 0.68 0.946779
Target:  5'- gUCGCCCGcGUCCAGGaggcGCGgcacGAGCAc- -3'
miRNA:   3'- -GGCGGGC-CAGGUCUa---UGCa---CUUGUcu -5'
10703 5' -54 NC_002794.1 + 142901 0.68 0.946779
Target:  5'- gUGCCCGGcguccUCCGGGggcCG-GAGCAGGa -3'
miRNA:   3'- gGCGGGCC-----AGGUCUau-GCaCUUGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.