miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10703 5' -54 NC_002794.1 + 2018 0.71 0.860122
Target:  5'- gCGCCCgccggccuuauacggGGUCCGGggGCGUGuuccucgccaaAACAGAg -3'
miRNA:   3'- gGCGGG---------------CCAGGUCuaUGCAC-----------UUGUCU- -5'
10703 5' -54 NC_002794.1 + 12204 0.67 0.974044
Target:  5'- gCCGCUCGGacgugCCGGcgGCGUcGGCGGc -3'
miRNA:   3'- -GGCGGGCCa----GGUCuaUGCAcUUGUCu -5'
10703 5' -54 NC_002794.1 + 15321 0.7 0.871913
Target:  5'- cCCGCaggugaCGuGUCCGGAcgGCGUGGcCAGAu -3'
miRNA:   3'- -GGCGg-----GC-CAGGUCUa-UGCACUuGUCU- -5'
10703 5' -54 NC_002794.1 + 30394 0.66 0.98101
Target:  5'- gCCGCCCGcGaCguGAUGcCGUGGucgaacgucguGCAGAu -3'
miRNA:   3'- -GGCGGGC-CaGguCUAU-GCACU-----------UGUCU- -5'
10703 5' -54 NC_002794.1 + 33079 0.66 0.984277
Target:  5'- aCGCUCGaauucuUCCAGAUccuccacggcgugaACGUGAGCGGc -3'
miRNA:   3'- gGCGGGCc-----AGGUCUA--------------UGCACUUGUCu -5'
10703 5' -54 NC_002794.1 + 35657 0.66 0.982988
Target:  5'- gCGCCCGGUCUccg-ACGUGGuCAa- -3'
miRNA:   3'- gGCGGGCCAGGucuaUGCACUuGUcu -5'
10703 5' -54 NC_002794.1 + 43855 0.68 0.942392
Target:  5'- cCCGCUCGGcCCGGGgcACGUaGACGGu -3'
miRNA:   3'- -GGCGGGCCaGGUCUa-UGCAcUUGUCu -5'
10703 5' -54 NC_002794.1 + 44453 0.67 0.969648
Target:  5'- cCCGCCCGGacgUCGGcgGCG-GAgaccgccccgucgaaACAGAg -3'
miRNA:   3'- -GGCGGGCCa--GGUCuaUGCaCU---------------UGUCU- -5'
10703 5' -54 NC_002794.1 + 45943 0.67 0.971355
Target:  5'- cCCGCCCGGUgaccgucucUCGGGcGCGUGAu---- -3'
miRNA:   3'- -GGCGGGCCA---------GGUCUaUGCACUugucu -5'
10703 5' -54 NC_002794.1 + 47740 0.67 0.971355
Target:  5'- cCCGCCgGGUCCAcGUGgcggcCGUGGucGCGGc -3'
miRNA:   3'- -GGCGGgCCAGGUcUAU-----GCACU--UGUCu -5'
10703 5' -54 NC_002794.1 + 48566 0.74 0.715093
Target:  5'- gCCGCCC-GUCCAGAUGgGcGAGcCGGAg -3'
miRNA:   3'- -GGCGGGcCAGGUCUAUgCaCUU-GUCU- -5'
10703 5' -54 NC_002794.1 + 69832 0.71 0.866819
Target:  5'- uCCGCCCGGUCCGcuggcucaccgccuCGcGAACAGGc -3'
miRNA:   3'- -GGCGGGCCAGGUcuau----------GCaCUUGUCU- -5'
10703 5' -54 NC_002794.1 + 71077 0.71 0.864605
Target:  5'- gCCGCCgGGUCCAGAc----GAACAGc -3'
miRNA:   3'- -GGCGGgCCAGGUCUaugcaCUUGUCu -5'
10703 5' -54 NC_002794.1 + 71274 0.69 0.932932
Target:  5'- uCCGCgCGGUCCcGAUACGgaaAAUAGc -3'
miRNA:   3'- -GGCGgGCCAGGuCUAUGCac-UUGUCu -5'
10703 5' -54 NC_002794.1 + 77782 0.74 0.705269
Target:  5'- cCCGCaCGGUCCAGAU-CGUGcAGcCGGAg -3'
miRNA:   3'- -GGCGgGCCAGGUCUAuGCAC-UU-GUCU- -5'
10703 5' -54 NC_002794.1 + 80405 0.69 0.927857
Target:  5'- cUCGCCgCGGcCCAGGUgGCGccGGGCGGGg -3'
miRNA:   3'- -GGCGG-GCCaGGUCUA-UGCa-CUUGUCU- -5'
10703 5' -54 NC_002794.1 + 88460 0.66 0.982988
Target:  5'- aUGCCUGGUCCgcAGAUAcCGUugGAGCGu- -3'
miRNA:   3'- gGCGGGCCAGG--UCUAU-GCA--CUUGUcu -5'
10703 5' -54 NC_002794.1 + 88776 0.67 0.974044
Target:  5'- gUCGCCgGuGUaaUCGGAU-CGUGAACGGGc -3'
miRNA:   3'- -GGCGGgC-CA--GGUCUAuGCACUUGUCU- -5'
10703 5' -54 NC_002794.1 + 91978 0.66 0.978865
Target:  5'- aCCGCCUGG-CCAucUACaacacgGGGCAGAa -3'
miRNA:   3'- -GGCGGGCCaGGUcuAUGca----CUUGUCU- -5'
10703 5' -54 NC_002794.1 + 94672 0.68 0.950939
Target:  5'- gUGCCCGG-CCuug-GCG-GAGCAGAa -3'
miRNA:   3'- gGCGGGCCaGGucuaUGCaCUUGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.