miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10704 3' -60.1 NC_002794.1 + 190407 1.08 0.001747
Target:  5'- cGUACACGGCGCCCCACCAGUCCACCAg -3'
miRNA:   3'- -CAUGUGCCGCGGGGUGGUCAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 183970 0.8 0.155844
Target:  5'- -cACGCuGCGCUCCACCGcGUCCGCCAc -3'
miRNA:   3'- caUGUGcCGCGGGGUGGU-CAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 52900 0.78 0.189284
Target:  5'- -aACGCGGCGCCgCCGCCGucgCCGCCGc -3'
miRNA:   3'- caUGUGCCGCGG-GGUGGUca-GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 186670 0.77 0.228871
Target:  5'- cGUACACGGCG-CCCGCCAcGUCCAg-- -3'
miRNA:   3'- -CAUGUGCCGCgGGGUGGU-CAGGUggu -5'
10704 3' -60.1 NC_002794.1 + 145138 0.77 0.245434
Target:  5'- cUGCG-GGCGCCCCugUGGUUCACCGg -3'
miRNA:   3'- cAUGUgCCGCGGGGugGUCAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 189588 0.76 0.26905
Target:  5'- -gGC-CGGCGCCCCuuaGCCcGUCCGCCc -3'
miRNA:   3'- caUGuGCCGCGGGG---UGGuCAGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 90198 0.75 0.301104
Target:  5'- -gGCACGGUGCCCgCGCCuccGcCCGCCGc -3'
miRNA:   3'- caUGUGCCGCGGG-GUGGu--CaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 31335 0.74 0.343356
Target:  5'- -gGCuCGGCG-CCCGCCGuGUCCGCCGc -3'
miRNA:   3'- caUGuGCCGCgGGGUGGU-CAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 63704 0.74 0.3508
Target:  5'- -gACgACGGCGCCggcgCCGCCGGaCCGCCGa -3'
miRNA:   3'- caUG-UGCCGCGG----GGUGGUCaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 75472 0.74 0.35381
Target:  5'- cGUAcCACGGCGCcgagacggCCCgcguacgagccggcaACCAGUCCGCCGc -3'
miRNA:   3'- -CAU-GUGCCGCG--------GGG---------------UGGUCAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 189556 0.74 0.36603
Target:  5'- -cACAUGGCgGUCCCGCuCGGUCgGCCGg -3'
miRNA:   3'- caUGUGCCG-CGGGGUG-GUCAGgUGGU- -5'
10704 3' -60.1 NC_002794.1 + 187900 0.74 0.36603
Target:  5'- -cGCGCGGUGCcgcucgCCCGCCGGgccCCGCCGc -3'
miRNA:   3'- caUGUGCCGCG------GGGUGGUCa--GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 24206 0.73 0.389714
Target:  5'- -aGCGCGGCGgCCCGCuCAcccguguccGUCCACCc -3'
miRNA:   3'- caUGUGCCGCgGGGUG-GU---------CAGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 149252 0.73 0.397829
Target:  5'- gGU-CGCGGCGCCaCCACCcucGUCCccGCCGg -3'
miRNA:   3'- -CAuGUGCCGCGG-GGUGGu--CAGG--UGGU- -5'
10704 3' -60.1 NC_002794.1 + 34772 0.73 0.406051
Target:  5'- -gGCACGGcCGCCCgCGCCagccgAGUCgGCCGa -3'
miRNA:   3'- caUGUGCC-GCGGG-GUGG-----UCAGgUGGU- -5'
10704 3' -60.1 NC_002794.1 + 128448 0.73 0.41187
Target:  5'- -cGCACGGCGCCUCcggagcccaggacgACCGGU-CACCGg -3'
miRNA:   3'- caUGUGCCGCGGGG--------------UGGUCAgGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 40336 0.73 0.41438
Target:  5'- -cGCGCGGaCGCgCCACCGGcggcgCCGCCu -3'
miRNA:   3'- caUGUGCC-GCGgGGUGGUCa----GGUGGu -5'
10704 3' -60.1 NC_002794.1 + 66705 0.72 0.431347
Target:  5'- cGUACGCcGCGCCCgGCaCGG-CCGCCGc -3'
miRNA:   3'- -CAUGUGcCGCGGGgUG-GUCaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 68426 0.72 0.431347
Target:  5'- -gGCACGGUGgCCCACCAccgcugguUCCGCCu -3'
miRNA:   3'- caUGUGCCGCgGGGUGGUc-------AGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 194029 0.72 0.448715
Target:  5'- -cGC-CGGCGCCUCGCCcG-CCGCCGc -3'
miRNA:   3'- caUGuGCCGCGGGGUGGuCaGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.