miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10704 3' -60.1 NC_002794.1 + 3564 0.69 0.589113
Target:  5'- -gGgGCGGUcaaucGCCCC-CCAGcCCACCGa -3'
miRNA:   3'- caUgUGCCG-----CGGGGuGGUCaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 8175 0.71 0.502997
Target:  5'- -gGCcCGGCGUCCCGcCCGGUuucCCACCc -3'
miRNA:   3'- caUGuGCCGCGGGGU-GGUCA---GGUGGu -5'
10704 3' -60.1 NC_002794.1 + 10835 0.68 0.696894
Target:  5'- -gAgACGGCGCCCUGCUcGUCaCGCUc -3'
miRNA:   3'- caUgUGCCGCGGGGUGGuCAG-GUGGu -5'
10704 3' -60.1 NC_002794.1 + 15216 0.67 0.716137
Target:  5'- ---gGCGGCGUCCC-CC-GUCCGCgGg -3'
miRNA:   3'- caugUGCCGCGGGGuGGuCAGGUGgU- -5'
10704 3' -60.1 NC_002794.1 + 17208 0.66 0.807064
Target:  5'- -gACACcGcCGCCgCCACCAccgCCGCCAc -3'
miRNA:   3'- caUGUGcC-GCGG-GGUGGUca-GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 17650 0.7 0.579354
Target:  5'- --cCGCGGcCGCCgCCACCGccgCCACCGc -3'
miRNA:   3'- cauGUGCC-GCGG-GGUGGUca-GGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 18274 0.66 0.7898
Target:  5'- aUGCGCGGCGCCgaGCCuucgaaccgAG-CCGCCc -3'
miRNA:   3'- cAUGUGCCGCGGggUGG---------UCaGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 19468 0.69 0.618538
Target:  5'- -gGCgGCGGCGggaCCCGCCGGUCgcccgCACCGa -3'
miRNA:   3'- caUG-UGCCGCg--GGGUGGUCAG-----GUGGU- -5'
10704 3' -60.1 NC_002794.1 + 19533 0.7 0.531196
Target:  5'- -gGCGCGGCGCggCCCGCCGGUgUcggACCc -3'
miRNA:   3'- caUGUGCCGCG--GGGUGGUCAgG---UGGu -5'
10704 3' -60.1 NC_002794.1 + 23570 0.68 0.65787
Target:  5'- -gGCcCGGUGCCgCCGCCAc-CCGCCGa -3'
miRNA:   3'- caUGuGCCGCGG-GGUGGUcaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 24034 0.66 0.798501
Target:  5'- -gGCgACGGCgGUCCCucCCcGUCCGCCc -3'
miRNA:   3'- caUG-UGCCG-CGGGGu-GGuCAGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 24206 0.73 0.389714
Target:  5'- -aGCGCGGCGgCCCGCuCAcccguguccGUCCACCc -3'
miRNA:   3'- caUGUGCCGCgGGGUG-GU---------CAGGUGGu -5'
10704 3' -60.1 NC_002794.1 + 27489 0.68 0.667674
Target:  5'- -cGCGCcGagGCCgCGCCAGUCCAUCAu -3'
miRNA:   3'- caUGUGcCg-CGGgGUGGUCAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 31335 0.74 0.343356
Target:  5'- -gGCuCGGCG-CCCGCCGuGUCCGCCGc -3'
miRNA:   3'- caUGuGCCGCgGGGUGGU-CAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 31387 0.69 0.598901
Target:  5'- cGU-CGuCGGCgGCCCCGCCGcGcCCGCCGc -3'
miRNA:   3'- -CAuGU-GCCG-CGGGGUGGU-CaGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 32304 0.66 0.780967
Target:  5'- --cCGCGGCGgCCgCGCCGG-CCGCg- -3'
miRNA:   3'- cauGUGCCGCgGG-GUGGUCaGGUGgu -5'
10704 3' -60.1 NC_002794.1 + 32657 0.7 0.56963
Target:  5'- -gGCgACGGCGCCguCC-CCGucGUCCGCCAa -3'
miRNA:   3'- caUG-UGCCGCGG--GGuGGU--CAGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 33782 0.66 0.771109
Target:  5'- -aGCACGacagccuGUGCCgCCACCAGaaguUCUGCCAg -3'
miRNA:   3'- caUGUGC-------CGCGG-GGUGGUC----AGGUGGU- -5'
10704 3' -60.1 NC_002794.1 + 34772 0.73 0.406051
Target:  5'- -gGCACGGcCGCCCgCGCCagccgAGUCgGCCGa -3'
miRNA:   3'- caUGUGCC-GCGGG-GUGG-----UCAGgUGGU- -5'
10704 3' -60.1 NC_002794.1 + 35292 0.69 0.589113
Target:  5'- -gGCGuCGuGCGCCCUcggacggaccGCCAGUUCACCc -3'
miRNA:   3'- caUGU-GC-CGCGGGG----------UGGUCAGGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.