Results 1 - 20 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10704 | 5' | -53.8 | NC_002794.1 | + | 190441 | 1.07 | 0.008197 |
Target: 5'- gUGCGACACGAAAUACGUGCGCGGCGUc -3' miRNA: 3'- -ACGCUGUGCUUUAUGCACGCGCCGCA- -5' |
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10704 | 5' | -53.8 | NC_002794.1 | + | 91216 | 0.84 | 0.237204 |
Target: 5'- gGCGACGCGAcg-GCGgacgGCGCGGCGg -3' miRNA: 3'- aCGCUGUGCUuuaUGCa---CGCGCCGCa -5' |
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10704 | 5' | -53.8 | NC_002794.1 | + | 50570 | 0.81 | 0.351959 |
Target: 5'- cUGuCGACACG----GCGUGCGCGGCGg -3' miRNA: 3'- -AC-GCUGUGCuuuaUGCACGCGCCGCa -5' |
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10704 | 5' | -53.8 | NC_002794.1 | + | 126383 | 0.78 | 0.463156 |
Target: 5'- gGCGccggggccuGCGCGGcg-GCGUGCGCGGCGg -3' miRNA: 3'- aCGC---------UGUGCUuuaUGCACGCGCCGCa -5' |
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10704 | 5' | -53.8 | NC_002794.1 | + | 116064 | 0.77 | 0.539995 |
Target: 5'- cGCGACugGGGucGCGgagcgcucgGCGCGGCGg -3' miRNA: 3'- aCGCUGugCUUuaUGCa--------CGCGCCGCa -5' |
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10704 | 5' | -53.8 | NC_002794.1 | + | 166239 | 0.77 | 0.539995 |
Target: 5'- cGCGACAUGAcguggaAGUGUGUGgGCGGCGg -3' miRNA: 3'- aCGCUGUGCU------UUAUGCACgCGCCGCa -5' |
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10704 | 5' | -53.8 | NC_002794.1 | + | 114706 | 0.76 | 0.569957 |
Target: 5'- cUGCGAgACGGAcgGCG-GCGgCGGCGg -3' miRNA: 3'- -ACGCUgUGCUUuaUGCaCGC-GCCGCa -5' |
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10704 | 5' | -53.8 | NC_002794.1 | + | 99576 | 0.76 | 0.590158 |
Target: 5'- gGCGAgG-GggGUGCGgaggGCGCGGCGg -3' miRNA: 3'- aCGCUgUgCuuUAUGCa---CGCGCCGCa -5' |
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10704 | 5' | -53.8 | NC_002794.1 | + | 37723 | 0.76 | 0.591172 |
Target: 5'- cGCGACccGCGAGcgGCGgcgccgccggcggcgGCGCGGCGg -3' miRNA: 3'- aCGCUG--UGCUUuaUGCa--------------CGCGCCGCa -5' |
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10704 | 5' | -53.8 | NC_002794.1 | + | 184507 | 0.75 | 0.62067 |
Target: 5'- gGCGGCGCGGGcccCGcGCGCGGCGc -3' miRNA: 3'- aCGCUGUGCUUuauGCaCGCGCCGCa -5' |
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10704 | 5' | -53.8 | NC_002794.1 | + | 19452 | 0.75 | 0.630868 |
Target: 5'- aGCgGGCACGAGcgGCG-GCGgCGGCGg -3' miRNA: 3'- aCG-CUGUGCUUuaUGCaCGC-GCCGCa -5' |
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10704 | 5' | -53.8 | NC_002794.1 | + | 36928 | 0.75 | 0.630868 |
Target: 5'- cGCGAcCGCGGAGgagaaaguccGCGUcGCGCGGCGg -3' miRNA: 3'- aCGCU-GUGCUUUa---------UGCA-CGCGCCGCa -5' |
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10704 | 5' | -53.8 | NC_002794.1 | + | 24190 | 0.74 | 0.68171 |
Target: 5'- cGCGGCAcCGAGAc-CGaGCGCGGCGg -3' miRNA: 3'- aCGCUGU-GCUUUauGCaCGCGCCGCa -5' |
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10704 | 5' | -53.8 | NC_002794.1 | + | 873 | 0.74 | 0.691791 |
Target: 5'- cGCGAgGCGGucgGCGUGCGC-GCGg -3' miRNA: 3'- aCGCUgUGCUuuaUGCACGCGcCGCa -5' |
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10704 | 5' | -53.8 | NC_002794.1 | + | 44306 | 0.74 | 0.701822 |
Target: 5'- gGCGAgGCGggGaGCGaccgcgaGCGCGGCGg -3' miRNA: 3'- aCGCUgUGCuuUaUGCa------CGCGCCGCa -5' |
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10704 | 5' | -53.8 | NC_002794.1 | + | 108867 | 0.73 | 0.711795 |
Target: 5'- cGCGGuCACcGGGUccaacucgGCGUGCGCGGUGUa -3' miRNA: 3'- aCGCU-GUGcUUUA--------UGCACGCGCCGCA- -5' |
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10704 | 5' | -53.8 | NC_002794.1 | + | 99095 | 0.73 | 0.721701 |
Target: 5'- aGCGACAgCGGAGUGCc-GUGCGGCa- -3' miRNA: 3'- aCGCUGU-GCUUUAUGcaCGCGCCGca -5' |
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10704 | 5' | -53.8 | NC_002794.1 | + | 102468 | 0.73 | 0.750924 |
Target: 5'- aUGCGGCGCGucg-GCGUGC-CGGCc- -3' miRNA: 3'- -ACGCUGUGCuuuaUGCACGcGCCGca -5' |
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10704 | 5' | -53.8 | NC_002794.1 | + | 55181 | 0.73 | 0.758569 |
Target: 5'- gGCGACuCGAGGcgGCGgcccuaacaccgGCGCGGCGg -3' miRNA: 3'- aCGCUGuGCUUUa-UGCa-----------CGCGCCGCa -5' |
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10704 | 5' | -53.8 | NC_002794.1 | + | 117645 | 0.73 | 0.760469 |
Target: 5'- cGCGGCcccggACGAAGaGCGccacGCGCGGCGg -3' miRNA: 3'- aCGCUG-----UGCUUUaUGCa---CGCGCCGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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