miRNA display CGI


Results 1 - 20 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10704 5' -53.8 NC_002794.1 + 873 0.74 0.691791
Target:  5'- cGCGAgGCGGucgGCGUGCGC-GCGg -3'
miRNA:   3'- aCGCUgUGCUuuaUGCACGCGcCGCa -5'
10704 5' -53.8 NC_002794.1 + 9316 0.68 0.935048
Target:  5'- gGCGggaaagaggaaggaaACGCG-GGUGCGUGCGcCGGCa- -3'
miRNA:   3'- aCGC---------------UGUGCuUUAUGCACGC-GCCGca -5'
10704 5' -53.8 NC_002794.1 + 12193 0.68 0.933059
Target:  5'- cGCGGC-CGGGcgccgcucggACGUGCcgGCGGCGUc -3'
miRNA:   3'- aCGCUGuGCUUua--------UGCACG--CGCCGCA- -5'
10704 5' -53.8 NC_002794.1 + 12521 0.66 0.981432
Target:  5'- gGCGGCugGGugGAUugGaaggaaCGCGGCGc -3'
miRNA:   3'- aCGCUGugCU--UUAugCac----GCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 13099 0.7 0.861471
Target:  5'- cGgGGgACGAGGUGCGUucggcggggucgccGCGCGGCu- -3'
miRNA:   3'- aCgCUgUGCUUUAUGCA--------------CGCGCCGca -5'
10704 5' -53.8 NC_002794.1 + 18262 0.72 0.788392
Target:  5'- gGCGAcCGCGAGA----UGCGCGGCGc -3'
miRNA:   3'- aCGCU-GUGCUUUaugcACGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 19452 0.75 0.630868
Target:  5'- aGCgGGCACGAGcgGCG-GCGgCGGCGg -3'
miRNA:   3'- aCG-CUGUGCUUuaUGCaCGC-GCCGCa -5'
10704 5' -53.8 NC_002794.1 + 21917 0.72 0.797433
Target:  5'- gGCGGCggagACGAcg-GCGgcgGCGCGGCGc -3'
miRNA:   3'- aCGCUG----UGCUuuaUGCa--CGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 24190 0.74 0.68171
Target:  5'- cGCGGCAcCGAGAc-CGaGCGCGGCGg -3'
miRNA:   3'- aCGCUGU-GCUUUauGCaCGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 31056 0.69 0.903134
Target:  5'- aGCGGCACGGcggccagcucgcgcAGcACGUcgaGCGUGGCGa -3'
miRNA:   3'- aCGCUGUGCU--------------UUaUGCA---CGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 32416 0.68 0.937959
Target:  5'- gUGCaGCACGAAGcUGagauucUGCGCGGCGa -3'
miRNA:   3'- -ACGcUGUGCUUU-AUgc----ACGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 32860 0.69 0.91049
Target:  5'- aGCGGCcgagccgGCGGGcgGCGgcgGCGgCGGCGg -3'
miRNA:   3'- aCGCUG-------UGCUUuaUGCa--CGC-GCCGCa -5'
10704 5' -53.8 NC_002794.1 + 36332 0.7 0.863739
Target:  5'- -aCGGCGCGcAGUcgagcaacccgGCGUGCGCGGCc- -3'
miRNA:   3'- acGCUGUGCuUUA-----------UGCACGCGCCGca -5'
10704 5' -53.8 NC_002794.1 + 36928 0.75 0.630868
Target:  5'- cGCGAcCGCGGAGgagaaaguccGCGUcGCGCGGCGg -3'
miRNA:   3'- aCGCU-GUGCUUUa---------UGCA-CGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 37272 0.66 0.979294
Target:  5'- gGCgGGCGC-----GCGgGCGCGGCGUa -3'
miRNA:   3'- aCG-CUGUGcuuuaUGCaCGCGCCGCA- -5'
10704 5' -53.8 NC_002794.1 + 37723 0.76 0.591172
Target:  5'- cGCGACccGCGAGcgGCGgcgccgccggcggcgGCGCGGCGg -3'
miRNA:   3'- aCGCUG--UGCUUuaUGCa--------------CGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 38469 0.71 0.820222
Target:  5'- cGCGGCGCGcccuuuauggGCGgaggaaGCGCGGCGg -3'
miRNA:   3'- aCGCUGUGCuuua------UGCa-----CGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 41943 0.7 0.871164
Target:  5'- aGUG-CACGcccucgGCGUGCGCGGCc- -3'
miRNA:   3'- aCGCuGUGCuuua--UGCACGCGCCGca -5'
10704 5' -53.8 NC_002794.1 + 42565 0.68 0.947053
Target:  5'- cGCGACcccgcgGCGGAcccgcggACGgaggaggGCGCGGCGg -3'
miRNA:   3'- aCGCUG------UGCUUua-----UGCa------CGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 44306 0.74 0.701822
Target:  5'- gGCGAgGCGggGaGCGaccgcgaGCGCGGCGg -3'
miRNA:   3'- aCGCUgUGCuuUaUGCa------CGCGCCGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.