miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10704 5' -53.8 NC_002794.1 + 190441 1.07 0.008197
Target:  5'- gUGCGACACGAAAUACGUGCGCGGCGUc -3'
miRNA:   3'- -ACGCUGUGCUUUAUGCACGCGCCGCA- -5'
10704 5' -53.8 NC_002794.1 + 91216 0.84 0.237204
Target:  5'- gGCGACGCGAcg-GCGgacgGCGCGGCGg -3'
miRNA:   3'- aCGCUGUGCUuuaUGCa---CGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 50570 0.81 0.351959
Target:  5'- cUGuCGACACG----GCGUGCGCGGCGg -3'
miRNA:   3'- -AC-GCUGUGCuuuaUGCACGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 126383 0.78 0.463156
Target:  5'- gGCGccggggccuGCGCGGcg-GCGUGCGCGGCGg -3'
miRNA:   3'- aCGC---------UGUGCUuuaUGCACGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 116064 0.77 0.539995
Target:  5'- cGCGACugGGGucGCGgagcgcucgGCGCGGCGg -3'
miRNA:   3'- aCGCUGugCUUuaUGCa--------CGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 166239 0.77 0.539995
Target:  5'- cGCGACAUGAcguggaAGUGUGUGgGCGGCGg -3'
miRNA:   3'- aCGCUGUGCU------UUAUGCACgCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 114706 0.76 0.569957
Target:  5'- cUGCGAgACGGAcgGCG-GCGgCGGCGg -3'
miRNA:   3'- -ACGCUgUGCUUuaUGCaCGC-GCCGCa -5'
10704 5' -53.8 NC_002794.1 + 99576 0.76 0.590158
Target:  5'- gGCGAgG-GggGUGCGgaggGCGCGGCGg -3'
miRNA:   3'- aCGCUgUgCuuUAUGCa---CGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 37723 0.76 0.591172
Target:  5'- cGCGACccGCGAGcgGCGgcgccgccggcggcgGCGCGGCGg -3'
miRNA:   3'- aCGCUG--UGCUUuaUGCa--------------CGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 184507 0.75 0.62067
Target:  5'- gGCGGCGCGGGcccCGcGCGCGGCGc -3'
miRNA:   3'- aCGCUGUGCUUuauGCaCGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 19452 0.75 0.630868
Target:  5'- aGCgGGCACGAGcgGCG-GCGgCGGCGg -3'
miRNA:   3'- aCG-CUGUGCUUuaUGCaCGC-GCCGCa -5'
10704 5' -53.8 NC_002794.1 + 36928 0.75 0.630868
Target:  5'- cGCGAcCGCGGAGgagaaaguccGCGUcGCGCGGCGg -3'
miRNA:   3'- aCGCU-GUGCUUUa---------UGCA-CGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 24190 0.74 0.68171
Target:  5'- cGCGGCAcCGAGAc-CGaGCGCGGCGg -3'
miRNA:   3'- aCGCUGU-GCUUUauGCaCGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 873 0.74 0.691791
Target:  5'- cGCGAgGCGGucgGCGUGCGC-GCGg -3'
miRNA:   3'- aCGCUgUGCUuuaUGCACGCGcCGCa -5'
10704 5' -53.8 NC_002794.1 + 44306 0.74 0.701822
Target:  5'- gGCGAgGCGggGaGCGaccgcgaGCGCGGCGg -3'
miRNA:   3'- aCGCUgUGCuuUaUGCa------CGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 108867 0.73 0.711795
Target:  5'- cGCGGuCACcGGGUccaacucgGCGUGCGCGGUGUa -3'
miRNA:   3'- aCGCU-GUGcUUUA--------UGCACGCGCCGCA- -5'
10704 5' -53.8 NC_002794.1 + 99095 0.73 0.721701
Target:  5'- aGCGACAgCGGAGUGCc-GUGCGGCa- -3'
miRNA:   3'- aCGCUGU-GCUUUAUGcaCGCGCCGca -5'
10704 5' -53.8 NC_002794.1 + 102468 0.73 0.750924
Target:  5'- aUGCGGCGCGucg-GCGUGC-CGGCc- -3'
miRNA:   3'- -ACGCUGUGCuuuaUGCACGcGCCGca -5'
10704 5' -53.8 NC_002794.1 + 55181 0.73 0.758569
Target:  5'- gGCGACuCGAGGcgGCGgcccuaacaccgGCGCGGCGg -3'
miRNA:   3'- aCGCUGuGCUUUa-UGCa-----------CGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 117645 0.73 0.760469
Target:  5'- cGCGGCcccggACGAAGaGCGccacGCGCGGCGg -3'
miRNA:   3'- aCGCUG-----UGCUUUaUGCa---CGCGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.