miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10704 5' -53.8 NC_002794.1 + 141634 0.72 0.779213
Target:  5'- aGCGACGgGAAGgccgGCGUGgcCGCGGCc- -3'
miRNA:   3'- aCGCUGUgCUUUa---UGCAC--GCGCCGca -5'
10704 5' -53.8 NC_002794.1 + 107226 0.72 0.779213
Target:  5'- gGCGGCGCGcg--ACGgGgGCGGCGUc -3'
miRNA:   3'- aCGCUGUGCuuuaUGCaCgCGCCGCA- -5'
10704 5' -53.8 NC_002794.1 + 187931 0.72 0.779213
Target:  5'- cGCGACcgucGCGucacGCGUGCGCGcGCGa -3'
miRNA:   3'- aCGCUG----UGCuuuaUGCACGCGC-CGCa -5'
10704 5' -53.8 NC_002794.1 + 150213 0.72 0.779213
Target:  5'- aGCGGCugcugcCGAGcUGCGUGCGaCGGCa- -3'
miRNA:   3'- aCGCUGu-----GCUUuAUGCACGC-GCCGca -5'
10704 5' -53.8 NC_002794.1 + 18262 0.72 0.788392
Target:  5'- gGCGAcCGCGAGA----UGCGCGGCGc -3'
miRNA:   3'- aCGCU-GUGCUUUaugcACGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 95775 0.72 0.788392
Target:  5'- cGCGACgGCGGccgggGCGagagGCGCGGCGg -3'
miRNA:   3'- aCGCUG-UGCUuua--UGCa---CGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 21917 0.72 0.797433
Target:  5'- gGCGGCggagACGAcg-GCGgcgGCGCGGCGc -3'
miRNA:   3'- aCGCUG----UGCUuuaUGCa--CGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 103790 0.71 0.81506
Target:  5'- gGCGGCugagcuUGAGGUGCGccUGCGaCGGCGg -3'
miRNA:   3'- aCGCUGu-----GCUUUAUGC--ACGC-GCCGCa -5'
10704 5' -53.8 NC_002794.1 + 38469 0.71 0.820222
Target:  5'- cGCGGCGCGcccuuuauggGCGgaggaaGCGCGGCGg -3'
miRNA:   3'- aCGCUGUGCuuua------UGCa-----CGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 100391 0.71 0.82363
Target:  5'- cGCGGCGUGGAcgACGUgGCGUGGCc- -3'
miRNA:   3'- aCGCUGUGCUUuaUGCA-CGCGCCGca -5'
10704 5' -53.8 NC_002794.1 + 55287 0.71 0.82363
Target:  5'- gGCGGCgACGAGGgcggcggcgGCGU-CGCGGCGg -3'
miRNA:   3'- aCGCUG-UGCUUUa--------UGCAcGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 107135 0.71 0.848272
Target:  5'- cGCGACGgGAAcgACGUcgGCGCccccGGCGa -3'
miRNA:   3'- aCGCUGUgCUUuaUGCA--CGCG----CCGCa -5'
10704 5' -53.8 NC_002794.1 + 143547 0.71 0.855332
Target:  5'- cGCGGCACGAGcacgGUGgcccagcCGUGCGCGcCGUc -3'
miRNA:   3'- aCGCUGUGCUU----UAU-------GCACGCGCcGCA- -5'
10704 5' -53.8 NC_002794.1 + 128151 0.71 0.856106
Target:  5'- aGCGACGCGAcg-GCGgcucGCGCcGCGg -3'
miRNA:   3'- aCGCUGUGCUuuaUGCa---CGCGcCGCa -5'
10704 5' -53.8 NC_002794.1 + 185178 0.71 0.856106
Target:  5'- cGCGGCGCGGucggcGCGgucgGCGCGGUc- -3'
miRNA:   3'- aCGCUGUGCUuua--UGCa---CGCGCCGca -5'
10704 5' -53.8 NC_002794.1 + 13099 0.7 0.861471
Target:  5'- cGgGGgACGAGGUGCGUucggcggggucgccGCGCGGCu- -3'
miRNA:   3'- aCgCUgUGCUUUAUGCA--------------CGCGCCGca -5'
10704 5' -53.8 NC_002794.1 + 36332 0.7 0.863739
Target:  5'- -aCGGCGCGcAGUcgagcaacccgGCGUGCGCGGCc- -3'
miRNA:   3'- acGCUGUGCuUUA-----------UGCACGCGCCGca -5'
10704 5' -53.8 NC_002794.1 + 184629 0.7 0.863739
Target:  5'- aGCGucCACGAucgGCGUcGCGuCGGCGg -3'
miRNA:   3'- aCGCu-GUGCUuuaUGCA-CGC-GCCGCa -5'
10704 5' -53.8 NC_002794.1 + 41943 0.7 0.871164
Target:  5'- aGUG-CACGcccucgGCGUGCGCGGCc- -3'
miRNA:   3'- aCGCuGUGCuuua--UGCACGCGCCGca -5'
10704 5' -53.8 NC_002794.1 + 61888 0.7 0.871164
Target:  5'- gGCGcCGCGcg--GCGaGCGCGGCGa -3'
miRNA:   3'- aCGCuGUGCuuuaUGCaCGCGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.