miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10704 5' -53.8 NC_002794.1 + 48037 0.66 0.981432
Target:  5'- cGCcgGACGCcGAGUGCGUGCugggcaCGGCGc -3'
miRNA:   3'- aCG--CUGUGcUUUAUGCACGc-----GCCGCa -5'
10704 5' -53.8 NC_002794.1 + 49600 0.68 0.937959
Target:  5'- cGCGAUcgGCGAcg-GCGgGCGCcGGCGg -3'
miRNA:   3'- aCGCUG--UGCUuuaUGCaCGCG-CCGCa -5'
10704 5' -53.8 NC_002794.1 + 50570 0.81 0.351959
Target:  5'- cUGuCGACACG----GCGUGCGCGGCGg -3'
miRNA:   3'- -AC-GCUGUGCuuuaUGCACGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 50647 0.67 0.968892
Target:  5'- cGCGAaugaGCGAAAacaugGCG-GcCGCGGCGc -3'
miRNA:   3'- aCGCUg---UGCUUUa----UGCaC-GCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 54045 0.67 0.968892
Target:  5'- cUGCGACcCGucg-ACGUG-GCGGCa- -3'
miRNA:   3'- -ACGCUGuGCuuuaUGCACgCGCCGca -5'
10704 5' -53.8 NC_002794.1 + 55181 0.73 0.758569
Target:  5'- gGCGACuCGAGGcgGCGgcccuaacaccgGCGCGGCGg -3'
miRNA:   3'- aCGCUGuGCUUUa-UGCa-----------CGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 55287 0.71 0.82363
Target:  5'- gGCGGCgACGAGGgcggcggcgGCGU-CGCGGCGg -3'
miRNA:   3'- aCGCUG-UGCUUUa--------UGCAcGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 56040 0.68 0.951251
Target:  5'- aGCGGCA-GAAGaGCGUGgGCaGGUGg -3'
miRNA:   3'- aCGCUGUgCUUUaUGCACgCG-CCGCa -5'
10704 5' -53.8 NC_002794.1 + 56286 0.67 0.958965
Target:  5'- gGCGGCA-GAgcacGAUGCGcGCGCGGUc- -3'
miRNA:   3'- aCGCUGUgCU----UUAUGCaCGCGCCGca -5'
10704 5' -53.8 NC_002794.1 + 60486 0.69 0.916936
Target:  5'- gGCGACACGGAgauccaGUACGUcuGCGUcgacGGCa- -3'
miRNA:   3'- aCGCUGUGCUU------UAUGCA--CGCG----CCGca -5'
10704 5' -53.8 NC_002794.1 + 61534 0.66 0.979294
Target:  5'- gGCGGCcgccGCGAAGacgACGccGcCGCGGCGg -3'
miRNA:   3'- aCGCUG----UGCUUUa--UGCa-C-GCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 61888 0.7 0.871164
Target:  5'- gGCGcCGCGcg--GCGaGCGCGGCGa -3'
miRNA:   3'- aCGCuGUGCuuuaUGCaCGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 62093 0.68 0.944423
Target:  5'- gGCGACGCGGcgcgccggacggucuGGUGCGUGuCGagcgaccgccaCGGCGa -3'
miRNA:   3'- aCGCUGUGCU---------------UUAUGCAC-GC-----------GCCGCa -5'
10704 5' -53.8 NC_002794.1 + 63689 0.67 0.968892
Target:  5'- gGCGACgACGAugacgACGacgGCGCcGGCGc -3'
miRNA:   3'- aCGCUG-UGCUuua--UGCa--CGCG-CCGCa -5'
10704 5' -53.8 NC_002794.1 + 64686 0.68 0.937959
Target:  5'- gUGCGACgACGGcgagGCGaGCGCGGaCGa -3'
miRNA:   3'- -ACGCUG-UGCUuua-UGCaCGCGCC-GCa -5'
10704 5' -53.8 NC_002794.1 + 64822 0.69 0.922548
Target:  5'- gGCGGCgagccggcgccgACGAccggACG-GCGCGGCGg -3'
miRNA:   3'- aCGCUG------------UGCUuua-UGCaCGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 66831 0.66 0.981432
Target:  5'- -cCGGCGCGAcuccggGCGccgccgucgGCGCGGCGa -3'
miRNA:   3'- acGCUGUGCUuua---UGCa--------CGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 69508 0.67 0.965796
Target:  5'- cGCG-CACGGucaGGUACG-GCGCGuGCa- -3'
miRNA:   3'- aCGCuGUGCU---UUAUGCaCGCGC-CGca -5'
10704 5' -53.8 NC_002794.1 + 71790 0.68 0.951251
Target:  5'- gGCGAguCGccccccgGCGgGCGCGGCGa -3'
miRNA:   3'- aCGCUguGCuuua---UGCaCGCGCCGCa -5'
10704 5' -53.8 NC_002794.1 + 82017 0.68 0.951251
Target:  5'- cGCuGACGcCGAAAcccgacgaucGCGUGgGCGGCGg -3'
miRNA:   3'- aCG-CUGU-GCUUUa---------UGCACgCGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.