Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10705 | 3' | -59.5 | NC_002794.1 | + | 192622 | 0.79 | 0.178642 |
Target: 5'- gGUGCGGACAGUCgGGCggCCGCU-CCAg -3' miRNA: 3'- -CACGCCUGUCGGgCUGa-GGCGAaGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 191366 | 0.66 | 0.823246 |
Target: 5'- -cGgGGACGGgCCGGaccCUCCGCgcCCGc -3' miRNA: 3'- caCgCCUGUCgGGCU---GAGGCGaaGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 190245 | 1.08 | 0.002101 |
Target: 5'- uGUGCGGACAGCCCGACUCCGCUUCCAg -3' miRNA: 3'- -CACGCCUGUCGGGCUGAGGCGAAGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 187824 | 0.67 | 0.762119 |
Target: 5'- -aGCGGAgCGcGCUCGGCUCgGCgcgCCGa -3' miRNA: 3'- caCGCCU-GU-CGGGCUGAGgCGaa-GGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 187684 | 0.67 | 0.780242 |
Target: 5'- aUGCGGgucgaGCGGCCCGuuggCCGUcUCCGu -3' miRNA: 3'- cACGCC-----UGUCGGGCuga-GGCGaAGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 186876 | 0.66 | 0.789121 |
Target: 5'- -aGCGGGCucggcucgcGGUCCGGCgUCCGCaggaccaggUUCCGg -3' miRNA: 3'- caCGCCUG---------UCGGGCUG-AGGCG---------AAGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 186349 | 0.66 | 0.789121 |
Target: 5'- -gGCGGcgACGuGCCCGACcagCCGCcgCCGc -3' miRNA: 3'- caCGCC--UGU-CGGGCUGa--GGCGaaGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 180735 | 0.68 | 0.705438 |
Target: 5'- -cGCGGACGacgccGUCCGGCUCCucggcgGCUUCg- -3' miRNA: 3'- caCGCCUGU-----CGGGCUGAGG------CGAAGgu -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 180005 | 0.69 | 0.617039 |
Target: 5'- -gGCGGGCccGGCCaCGACgacggCCGCggccgUCCGa -3' miRNA: 3'- caCGCCUG--UCGG-GCUGa----GGCGa----AGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 153349 | 0.66 | 0.814939 |
Target: 5'- cGUGUugucaGGACgcGGCCCGGCUgCGCgcCCu -3' miRNA: 3'- -CACG-----CCUG--UCGGGCUGAgGCGaaGGu -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 145570 | 0.67 | 0.762119 |
Target: 5'- -cGCGGACgAGCgCCGACggagCgGCggCCGg -3' miRNA: 3'- caCGCCUG-UCG-GGCUGa---GgCGaaGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 140773 | 0.75 | 0.312664 |
Target: 5'- cUGCGGGCGGCCCGGCagaacaugaUCCGUUacacggucuaUCCGg -3' miRNA: 3'- cACGCCUGUCGGGCUG---------AGGCGA----------AGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 137341 | 0.66 | 0.814939 |
Target: 5'- -cGCGGACGGCUCGGCgucgUCGggguCUUCUu -3' miRNA: 3'- caCGCCUGUCGGGCUGa---GGC----GAAGGu -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 134584 | 0.68 | 0.724651 |
Target: 5'- gGUGCuagaGGACcucGGgCCGACUCCGgaUCCc -3' miRNA: 3'- -CACG----CCUG---UCgGGCUGAGGCgaAGGu -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 133463 | 0.68 | 0.724651 |
Target: 5'- uUGCGGACggguaugcgGGCgCGACUCUugGCUUUCGc -3' miRNA: 3'- cACGCCUG---------UCGgGCUGAGG--CGAAGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 119772 | 0.66 | 0.814939 |
Target: 5'- -cGCGGcCGGCCuccaggCGGCUCCGg-UCCGc -3' miRNA: 3'- caCGCCuGUCGG------GCUGAGGCgaAGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 116909 | 0.67 | 0.771238 |
Target: 5'- -gGCGGcCGGUCCGGCgUCgGCU-CCGg -3' miRNA: 3'- caCGCCuGUCGGGCUG-AGgCGAaGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 112290 | 0.68 | 0.685995 |
Target: 5'- cGUGuCGGGCGGCCCcccGGgUCCGaCUUCg- -3' miRNA: 3'- -CAC-GCCUGUCGGG---CUgAGGC-GAAGgu -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 112211 | 0.66 | 0.823246 |
Target: 5'- -cGUGGAgcaCGGCCCG-CUCCaggGCgUCCAg -3' miRNA: 3'- caCGCCU---GUCGGGCuGAGG---CGaAGGU- -5' |
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10705 | 3' | -59.5 | NC_002794.1 | + | 107250 | 0.77 | 0.232362 |
Target: 5'- -cGCGGACcuGGCCCGGCggagCCGCgccgUCCGc -3' miRNA: 3'- caCGCCUG--UCGGGCUGa---GGCGa---AGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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