miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10705 5' -53.2 NC_002794.1 + 92698 0.7 0.912227
Target:  5'- uGGUGGAcaacccgcuGaCCGUGUCGAGccugucGCGCUGGc -3'
miRNA:   3'- -CCAUCUu--------CaGGCACAGCUU------CGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 94454 0.67 0.985072
Target:  5'- cGG-AGGAGUCgGUGgCGAcggcaacggcGGCGgCGGa -3'
miRNA:   3'- -CCaUCUUCAGgCACaGCU----------UCGCgGCC- -5'
10705 5' -53.2 NC_002794.1 + 106335 0.69 0.947472
Target:  5'- gGGUcGAcGGUUCGccggGUCGAcggcgggcgGGCGCCGGu -3'
miRNA:   3'- -CCAuCU-UCAGGCa---CAGCU---------UCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 110860 0.7 0.935697
Target:  5'- -cUGGAAGUCCacGUCGuccggcacguucuccAGGUGCCGGg -3'
miRNA:   3'- ccAUCUUCAGGcaCAGC---------------UUCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 111106 0.67 0.983279
Target:  5'- cGGcGGGA--CCGUggccGUCGAcGGCGCCGGc -3'
miRNA:   3'- -CCaUCUUcaGGCA----CAGCU-UCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 113992 0.71 0.893682
Target:  5'- --gAGcAG-CCGU-UCGAGGCGCCGGa -3'
miRNA:   3'- ccaUCuUCaGGCAcAGCUUCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 115177 0.68 0.97445
Target:  5'- uGGUAGAcggcccGGUgCCGgcgGUCGAgccggcguAGCGCCu- -3'
miRNA:   3'- -CCAUCU------UCA-GGCa--CAGCU--------UCGCGGcc -5'
10705 5' -53.2 NC_002794.1 + 115510 0.68 0.97445
Target:  5'- aGGUuGAGGUCCGccUGUCGcAGGaCGCggaGGa -3'
miRNA:   3'- -CCAuCUUCAGGC--ACAGC-UUC-GCGg--CC- -5'
10705 5' -53.2 NC_002794.1 + 115589 0.68 0.97445
Target:  5'- cGUAGcGG-CUGcgGUCGAcccgcucgcccGGCGCCGGg -3'
miRNA:   3'- cCAUCuUCaGGCa-CAGCU-----------UCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 115873 0.68 0.959172
Target:  5'- gGGUccgGGgcGUCCGgggcguccgCGGAGCGCgGGg -3'
miRNA:   3'- -CCA---UCuuCAGGCaca------GCUUCGCGgCC- -5'
10705 5' -53.2 NC_002794.1 + 116849 0.77 0.627155
Target:  5'- cGGUGGAucuucaugcggcGG-CCGUGUCGcgcucgucagggGGGCGCCGGc -3'
miRNA:   3'- -CCAUCU------------UCaGGCACAGC------------UUCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 118254 0.67 0.97692
Target:  5'- gGGcUGGAGGUcggCCGgggCGGcGGCGCCGGc -3'
miRNA:   3'- -CC-AUCUUCA---GGCacaGCU-UCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 120084 0.67 0.981328
Target:  5'- cGGUGGcGGcgacgaCCGUGcCGAGcGCGCCGc -3'
miRNA:   3'- -CCAUCuUCa-----GGCACaGCUU-CGCGGCc -5'
10705 5' -53.2 NC_002794.1 + 123774 0.69 0.947048
Target:  5'- cGUGGAcGccUCCGUGUUGGaggcgguGGCGCCGu -3'
miRNA:   3'- cCAUCUuC--AGGCACAGCU-------UCGCGGCc -5'
10705 5' -53.2 NC_002794.1 + 123967 0.71 0.880209
Target:  5'- --cAGGAG-CCGUacGUCGAccacgccguGGCGCCGGu -3'
miRNA:   3'- ccaUCUUCaGGCA--CAGCU---------UCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 128938 0.66 0.991939
Target:  5'- ---cGAAcGUCCG-GUgGAGccuGCGCCGGa -3'
miRNA:   3'- ccauCUU-CAGGCaCAgCUU---CGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 130439 0.79 0.488743
Target:  5'- uGGUccAGgcGUCCGUGUugggcggCGAGGCGCUGGc -3'
miRNA:   3'- -CCA--UCuuCAGGCACA-------GCUUCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 134202 0.69 0.955492
Target:  5'- uGGUGGggG-CCGUcgGUCGccAAGCGaCCGc -3'
miRNA:   3'- -CCAUCuuCaGGCA--CAGC--UUCGC-GGCc -5'
10705 5' -53.2 NC_002794.1 + 137457 0.66 0.98778
Target:  5'- cGGcGGAAuccgCCGUGUCGGcggccucguagagcAGCGCCa- -3'
miRNA:   3'- -CCaUCUUca--GGCACAGCU--------------UCGCGGcc -5'
10705 5' -53.2 NC_002794.1 + 142400 0.66 0.988215
Target:  5'- cGGUGcAGG-CgGcGUCGGcGGCGCCGGg -3'
miRNA:   3'- -CCAUcUUCaGgCaCAGCU-UCGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.