miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10705 5' -53.2 NC_002794.1 + 1076 0.67 0.985072
Target:  5'- --cGGggGUUCGUuUCGggGCGUCc- -3'
miRNA:   3'- ccaUCuuCAGGCAcAGCuuCGCGGcc -5'
10705 5' -53.2 NC_002794.1 + 2255 0.66 0.991939
Target:  5'- --aGGAAGUCCGaggCGAc-CGCCGGc -3'
miRNA:   3'- ccaUCUUCAGGCacaGCUucGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 14283 0.71 0.906271
Target:  5'- cGGcUGGAGcGUCaGcGUCGAGGCGCgGGg -3'
miRNA:   3'- -CC-AUCUU-CAGgCaCAGCUUCGCGgCC- -5'
10705 5' -53.2 NC_002794.1 + 14457 0.68 0.968942
Target:  5'- cGGgcGA---CCGUGUCGAGcggcGCGCCGc -3'
miRNA:   3'- -CCauCUucaGGCACAGCUU----CGCGGCc -5'
10705 5' -53.2 NC_002794.1 + 14586 0.71 0.887055
Target:  5'- ---cGAAGcgggCCGUGgCGAGcGCGCCGGg -3'
miRNA:   3'- ccauCUUCa---GGCACaGCUU-CGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 18707 0.66 0.989581
Target:  5'- cGGcGGcGGUCCGgacGUCGGAGCcgacgaGCCGc -3'
miRNA:   3'- -CCaUCuUCAGGCa--CAGCUUCG------CGGCc -5'
10705 5' -53.2 NC_002794.1 + 19505 0.77 0.60705
Target:  5'- cGGcGGAGGUCgCGccgcUCGGAGCGCCGGc -3'
miRNA:   3'- -CCaUCUUCAG-GCac--AGCUUCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 30068 0.69 0.943126
Target:  5'- ---cGggGUCCGgucgcccgGUCGAcgaGGCGCgCGGc -3'
miRNA:   3'- ccauCuuCAGGCa-------CAGCU---UCGCG-GCC- -5'
10705 5' -53.2 NC_002794.1 + 36898 0.7 0.928714
Target:  5'- --cAGAGcGUCCagagGUCGcGGCGCCGGc -3'
miRNA:   3'- ccaUCUU-CAGGca--CAGCuUCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 42465 0.68 0.968942
Target:  5'- uGgcGucGUCCaUGUCGcgcGCGCCGGg -3'
miRNA:   3'- cCauCuuCAGGcACAGCuu-CGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 47648 0.66 0.990461
Target:  5'- cGUGGucGUCCcgaacgaucggacaGUgGUCGAAGCGacaCGGg -3'
miRNA:   3'- cCAUCuuCAGG--------------CA-CAGCUUCGCg--GCC- -5'
10705 5' -53.2 NC_002794.1 + 53678 0.66 0.990819
Target:  5'- --cGGAuccGUCCGUcaaaCGGAGCGCCGc -3'
miRNA:   3'- ccaUCUu--CAGGCAca--GCUUCGCGGCc -5'
10705 5' -53.2 NC_002794.1 + 65809 0.68 0.968942
Target:  5'- ---cGAcGUCCGUuUCGAucAGCGCCGa -3'
miRNA:   3'- ccauCUuCAGGCAcAGCU--UCGCGGCc -5'
10705 5' -53.2 NC_002794.1 + 76778 0.67 0.981328
Target:  5'- cGUAGAAGUCCGaGcCGGgcgGGCGagCGGc -3'
miRNA:   3'- cCAUCUUCAGGCaCaGCU---UCGCg-GCC- -5'
10705 5' -53.2 NC_002794.1 + 87097 0.68 0.971793
Target:  5'- gGGUGGggGUgcaggCCGggcggGUgGggGUgcagGCCGGg -3'
miRNA:   3'- -CCAUCuuCA-----GGCa----CAgCuuCG----CGGCC- -5'
10705 5' -53.2 NC_002794.1 + 87139 0.68 0.971793
Target:  5'- gGGUGGggGUgcaggCCGggcggGUgGggGUgcagGCCGGg -3'
miRNA:   3'- -CCAUCuuCA-----GGCa----CAgCuuCG----CGGCC- -5'
10705 5' -53.2 NC_002794.1 + 87181 0.68 0.971793
Target:  5'- gGGUGGggGUgcaggCCGggcggGUgGggGUgcagGCCGGg -3'
miRNA:   3'- -CCAUCuuCA-----GGCa----CAgCuuCG----CGGCC- -5'
10705 5' -53.2 NC_002794.1 + 87223 0.68 0.971793
Target:  5'- gGGUGGggGUgcaggCCGggcggGUgGggGUgcagGCCGGg -3'
miRNA:   3'- -CCAUCuuCA-----GGCa----CAgCuuCG----CGGCC- -5'
10705 5' -53.2 NC_002794.1 + 89399 0.8 0.471074
Target:  5'- cGGU-GAGGUCCGUG---GAGCGCCGGc -3'
miRNA:   3'- -CCAuCUUCAGGCACagcUUCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 89950 0.67 0.97692
Target:  5'- --cGGGAG-CCGacGUCGAGGCGuUCGGa -3'
miRNA:   3'- ccaUCUUCaGGCa-CAGCUUCGC-GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.