miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10705 5' -53.2 NC_002794.1 + 190283 1.13 0.005156
Target:  5'- cGGUAGAAGUCCGUGUCGAAGCGCCGGc -3'
miRNA:   3'- -CCAUCUUCAGGCACAGCUUCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 89399 0.8 0.471074
Target:  5'- cGGU-GAGGUCCGUG---GAGCGCCGGc -3'
miRNA:   3'- -CCAuCUUCAGGCACagcUUCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 130439 0.79 0.488743
Target:  5'- uGGUccAGgcGUCCGUGUugggcggCGAGGCGCUGGc -3'
miRNA:   3'- -CCA--UCuuCAGGCACA-------GCUUCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 19505 0.77 0.60705
Target:  5'- cGGcGGAGGUCgCGccgcUCGGAGCGCCGGc -3'
miRNA:   3'- -CCaUCUUCAG-GCac--AGCUUCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 116849 0.77 0.627155
Target:  5'- cGGUGGAucuucaugcggcGG-CCGUGUCGcgcucgucagggGGGCGCCGGc -3'
miRNA:   3'- -CCAUCU------------UCaGGCACAGC------------UUCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 178080 0.72 0.850744
Target:  5'- gGGUgucgAGAguacacgaucccGGUaCgGUGUCGggGUGCCGGu -3'
miRNA:   3'- -CCA----UCU------------UCA-GgCACAGCuuCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 123967 0.71 0.880209
Target:  5'- --cAGGAG-CCGUacGUCGAccacgccguGGCGCCGGu -3'
miRNA:   3'- ccaUCUUCaGGCA--CAGCU---------UCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 14586 0.71 0.887055
Target:  5'- ---cGAAGcgggCCGUGgCGAGcGCGCCGGg -3'
miRNA:   3'- ccauCUUCa---GGCACaGCUU-CGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 113992 0.71 0.893682
Target:  5'- --gAGcAG-CCGU-UCGAGGCGCCGGa -3'
miRNA:   3'- ccaUCuUCaGGCAcAGCUUCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 14283 0.71 0.906271
Target:  5'- cGGcUGGAGcGUCaGcGUCGAGGCGCgGGg -3'
miRNA:   3'- -CC-AUCUU-CAGgCaCAGCUUCGCGgCC- -5'
10705 5' -53.2 NC_002794.1 + 156198 0.71 0.906271
Target:  5'- ---cGGAGUcgCCG-GUCGGAGgGCCGGc -3'
miRNA:   3'- ccauCUUCA--GGCaCAGCUUCgCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 92698 0.7 0.912227
Target:  5'- uGGUGGAcaacccgcuGaCCGUGUCGAGccugucGCGCUGGc -3'
miRNA:   3'- -CCAUCUu--------CaGGCACAGCUU------CGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 36898 0.7 0.928714
Target:  5'- --cAGAGcGUCCagagGUCGcGGCGCCGGc -3'
miRNA:   3'- ccaUCUU-CAGGca--CAGCuUCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 110860 0.7 0.935697
Target:  5'- -cUGGAAGUCCacGUCGuccggcacguucuccAGGUGCCGGg -3'
miRNA:   3'- ccAUCUUCAGGcaCAGC---------------UUCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 156052 0.69 0.938552
Target:  5'- --cGGggGcagCCGUGUCGAauagagcgGGCGuuGGc -3'
miRNA:   3'- ccaUCuuCa--GGCACAGCU--------UCGCggCC- -5'
10705 5' -53.2 NC_002794.1 + 30068 0.69 0.943126
Target:  5'- ---cGggGUCCGgucgcccgGUCGAcgaGGCGCgCGGc -3'
miRNA:   3'- ccauCuuCAGGCa-------CAGCU---UCGCG-GCC- -5'
10705 5' -53.2 NC_002794.1 + 123774 0.69 0.947048
Target:  5'- cGUGGAcGccUCCGUGUUGGaggcgguGGCGCCGu -3'
miRNA:   3'- cCAUCUuC--AGGCACAGCU-------UCGCGGCc -5'
10705 5' -53.2 NC_002794.1 + 106335 0.69 0.947472
Target:  5'- gGGUcGAcGGUUCGccggGUCGAcggcgggcgGGCGCCGGu -3'
miRNA:   3'- -CCAuCU-UCAGGCa---CAGCU---------UCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 142449 0.69 0.947472
Target:  5'- gGGUaagcAGAGGUCCc---CGAugAGCGCCGGc -3'
miRNA:   3'- -CCA----UCUUCAGGcacaGCU--UCGCGGCC- -5'
10705 5' -53.2 NC_002794.1 + 156844 0.69 0.954345
Target:  5'- --cGGggGUCgGUGccgcgcguucccgcUCGAGGCGCCu- -3'
miRNA:   3'- ccaUCuuCAGgCAC--------------AGCUUCGCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.