miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10706 3' -56.5 NC_002794.1 + 62062 0.68 0.830872
Target:  5'- cGACGCCGGcggcgacgCCGGCGGcgacgacggcgacgCGGCGCg -3'
miRNA:   3'- uUUGCGGCUa-------GGCCGUCaa------------GCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 63311 0.69 0.786545
Target:  5'- uAACGaaCCGAUCCGGCGGggggccCGaGCGCg -3'
miRNA:   3'- uUUGC--GGCUAGGCCGUCaa----GC-CGUGa -5'
10706 3' -56.5 NC_002794.1 + 64832 0.68 0.821666
Target:  5'- cGGCGCCGAcgaCCGGaCGGcgcggCGGCACc -3'
miRNA:   3'- uUUGCGGCUa--GGCC-GUCaa---GCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 65173 0.72 0.640094
Target:  5'- uGGCGCCGAgaCCGGCGGgugcCGGCGa- -3'
miRNA:   3'- uUUGCGGCUa-GGCCGUCaa--GCCGUga -5'
10706 3' -56.5 NC_002794.1 + 65249 0.68 0.829214
Target:  5'- cGGCGgCGAUCCGGCcucgccgAGcggCGGCGCc -3'
miRNA:   3'- uUUGCgGCUAGGCCG-------UCaa-GCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 65986 0.66 0.926133
Target:  5'- cAACGUCGAaCUgGGCGGUgauccCGGCACc -3'
miRNA:   3'- uUUGCGGCUaGG-CCGUCAa----GCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 66042 0.67 0.876373
Target:  5'- --uCGUCGggCCGGCAGcggCGGC-CUg -3'
miRNA:   3'- uuuGCGGCuaGGCCGUCaa-GCCGuGA- -5'
10706 3' -56.5 NC_002794.1 + 66726 0.73 0.579508
Target:  5'- --cCGCCGccaccgCCGGCGGUggcggCGGCGCg -3'
miRNA:   3'- uuuGCGGCua----GGCCGUCAa----GCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 69182 0.68 0.830044
Target:  5'- cGGGCGCUGAuUCCGGCAcg-CGGCccGCa -3'
miRNA:   3'- -UUUGCGGCU-AGGCCGUcaaGCCG--UGa -5'
10706 3' -56.5 NC_002794.1 + 73058 0.66 0.896735
Target:  5'- -cACGCUGAacuUCUGGCAGgaggacgGGCGCa -3'
miRNA:   3'- uuUGCGGCU---AGGCCGUCaag----CCGUGa -5'
10706 3' -56.5 NC_002794.1 + 77998 0.69 0.795551
Target:  5'- cGGGCGuuGuUCCGGCGG--CGGCGCc -3'
miRNA:   3'- -UUUGCggCuAGGCCGUCaaGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 82666 0.75 0.472705
Target:  5'- cGACGCCGcgCCGGCGGaUC-GCACg -3'
miRNA:   3'- uUUGCGGCuaGGCCGUCaAGcCGUGa -5'
10706 3' -56.5 NC_002794.1 + 83826 0.69 0.795551
Target:  5'- -cACGCCGAgccUCCGGCcGaUCGGuCGCc -3'
miRNA:   3'- uuUGCGGCU---AGGCCGuCaAGCC-GUGa -5'
10706 3' -56.5 NC_002794.1 + 84467 0.69 0.768136
Target:  5'- aAAGCGCCGucUCCGGCcuuuacGUUCGacGCGCUc -3'
miRNA:   3'- -UUUGCGGCu-AGGCCGu-----CAAGC--CGUGA- -5'
10706 3' -56.5 NC_002794.1 + 86984 0.69 0.795551
Target:  5'- cGACGa-GGUCCGGCGGcuUUCGGCGg- -3'
miRNA:   3'- uUUGCggCUAGGCCGUC--AAGCCGUga -5'
10706 3' -56.5 NC_002794.1 + 87350 0.67 0.869153
Target:  5'- cAGCaGCgGGUCCGGCGGcgagCGGCGu- -3'
miRNA:   3'- uUUG-CGgCUAGGCCGUCaa--GCCGUga -5'
10706 3' -56.5 NC_002794.1 + 89721 0.7 0.749253
Target:  5'- --gUGCCGAUCCGcGCGGcgUCGGUcCUu -3'
miRNA:   3'- uuuGCGGCUAGGC-CGUCa-AGCCGuGA- -5'
10706 3' -56.5 NC_002794.1 + 90082 0.66 0.926133
Target:  5'- ---gGCCGAUgUGGC---UCGGCACg -3'
miRNA:   3'- uuugCGGCUAgGCCGucaAGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 91261 0.68 0.838246
Target:  5'- cGGACGCCGuucguggaCCGGCGcggccuguacGUgUCGGCGCUg -3'
miRNA:   3'- -UUUGCGGCua------GGCCGU----------CA-AGCCGUGA- -5'
10706 3' -56.5 NC_002794.1 + 93998 0.71 0.690472
Target:  5'- cGGACGCCGGcgCCGGCGGcgggcCGGCGg- -3'
miRNA:   3'- -UUUGCGGCUa-GGCCGUCaa---GCCGUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.