miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10706 3' -56.5 NC_002794.1 + 12199 0.7 0.739656
Target:  5'- cGGGCGCCGcucggacgugCCGGCGGcgUCGGCGg- -3'
miRNA:   3'- -UUUGCGGCua--------GGCCGUCa-AGCCGUga -5'
10706 3' -56.5 NC_002794.1 + 17500 0.71 0.690472
Target:  5'- --uCGCCGAcgCCGGCcgAGaUCGGCGCc -3'
miRNA:   3'- uuuGCGGCUa-GGCCG--UCaAGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 20748 0.66 0.903075
Target:  5'- -cGCGCUGAUCCGcCAGcucucggaaCGGCGCg -3'
miRNA:   3'- uuUGCGGCUAGGCcGUCaa-------GCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 22719 0.66 0.896735
Target:  5'- cGGCGCCGAgagCCGGCGaacggUCGGUc-- -3'
miRNA:   3'- uUUGCGGCUa--GGCCGUca---AGCCGuga -5'
10706 3' -56.5 NC_002794.1 + 29203 0.67 0.869153
Target:  5'- --cCGUCcGUCCGGCGG-UCGGCGg- -3'
miRNA:   3'- uuuGCGGcUAGGCCGUCaAGCCGUga -5'
10706 3' -56.5 NC_002794.1 + 32010 0.66 0.920718
Target:  5'- cGACGCaGA-CCaGGCAGgggacgCGGCGCUg -3'
miRNA:   3'- uUUGCGgCUaGG-CCGUCaa----GCCGUGA- -5'
10706 3' -56.5 NC_002794.1 + 32859 0.69 0.75875
Target:  5'- cAGCgGCCGAgCCGGCGGgcggCGGCGg- -3'
miRNA:   3'- uUUG-CGGCUaGGCCGUCaa--GCCGUga -5'
10706 3' -56.5 NC_002794.1 + 34745 0.66 0.926133
Target:  5'- aGAGCGCgCGAcggCgCGGUGGgacgCGGCACg -3'
miRNA:   3'- -UUUGCG-GCUa--G-GCCGUCaa--GCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 37739 0.7 0.700439
Target:  5'- cGGCGCCG--CCGGCGG--CGGCGCg -3'
miRNA:   3'- uUUGCGGCuaGGCCGUCaaGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 40399 0.66 0.915069
Target:  5'- --uCGCCGAUUCGGUcgcGGggUCGGCcgGCg -3'
miRNA:   3'- uuuGCGGCUAGGCCG---UCa-AGCCG--UGa -5'
10706 3' -56.5 NC_002794.1 + 41251 0.68 0.846264
Target:  5'- --cCGCCGAcgCCGGCGGcccgUCGucGCGCUc -3'
miRNA:   3'- uuuGCGGCUa-GGCCGUCa---AGC--CGUGA- -5'
10706 3' -56.5 NC_002794.1 + 44223 0.68 0.830044
Target:  5'- cGGGCGCCGAgggcucggugCCgGGCGGcUCGGUGCc -3'
miRNA:   3'- -UUUGCGGCUa---------GG-CCGUCaAGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 44539 0.68 0.838246
Target:  5'- -cGCGCCGucgucgucgCCGGCGG--CGGCGCc -3'
miRNA:   3'- uuUGCGGCua-------GGCCGUCaaGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 49768 0.66 0.908587
Target:  5'- -cGCGCUcGUCUccccggaGGCGGUUgGGCACg -3'
miRNA:   3'- uuUGCGGcUAGG-------CCGUCAAgCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 53068 0.68 0.813119
Target:  5'- cAGCGCCGcgCCGcCAGcucgCGGCACc -3'
miRNA:   3'- uUUGCGGCuaGGCcGUCaa--GCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 55258 0.67 0.890168
Target:  5'- aGGACGCCGAagagCCGGgGGg-CGGCGgUg -3'
miRNA:   3'- -UUUGCGGCUa---GGCCgUCaaGCCGUgA- -5'
10706 3' -56.5 NC_002794.1 + 57407 0.66 0.909188
Target:  5'- cGGCGCCcgcguggCCGGCGugcuggUCGGCACg -3'
miRNA:   3'- uUUGCGGcua----GGCCGUca----AGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 58866 0.67 0.854092
Target:  5'- --uCGCCGA-CCGGCAGc-CGuGCGCg -3'
miRNA:   3'- uuuGCGGCUaGGCCGUCaaGC-CGUGa -5'
10706 3' -56.5 NC_002794.1 + 60641 0.68 0.838246
Target:  5'- cGGCGCCGGcggcgCCGGCcaccCGGCGCg -3'
miRNA:   3'- uUUGCGGCUa----GGCCGucaaGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 61161 0.68 0.821666
Target:  5'- cGAGCGCgCGGUCCGGa---UCGGCGgCUg -3'
miRNA:   3'- -UUUGCG-GCUAGGCCgucaAGCCGU-GA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.