miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10706 3' -56.5 NC_002794.1 + 189737 1.05 0.005762
Target:  5'- gAAACGCCGAUCCGGCAGUUCGGCACUc -3'
miRNA:   3'- -UUUGCGGCUAGGCCGUCAAGCCGUGA- -5'
10706 3' -56.5 NC_002794.1 + 101495 0.79 0.275002
Target:  5'- cGGCgGCCGGUCCGaGCGGUgCGGCACa -3'
miRNA:   3'- uUUG-CGGCUAGGC-CGUCAaGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 107315 0.78 0.330223
Target:  5'- gGGGCGCCG-UCCGcGCGGUUCGGCu-- -3'
miRNA:   3'- -UUUGCGGCuAGGC-CGUCAAGCCGuga -5'
10706 3' -56.5 NC_002794.1 + 82666 0.75 0.472705
Target:  5'- cGACGCCGcgCCGGCGGaUC-GCACg -3'
miRNA:   3'- uUUGCGGCuaGGCCGUCaAGcCGUGa -5'
10706 3' -56.5 NC_002794.1 + 181067 0.74 0.510559
Target:  5'- aGAACGCgGGUCCgGGCAGg--GGCACg -3'
miRNA:   3'- -UUUGCGgCUAGG-CCGUCaagCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 66726 0.73 0.579508
Target:  5'- --cCGCCGccaccgCCGGCGGUggcggCGGCGCg -3'
miRNA:   3'- uuuGCGGCua----GGCCGUCAa----GCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 139449 0.72 0.589553
Target:  5'- -cGCGCCGAU-CGGCAGgucgUCGuGCGCc -3'
miRNA:   3'- uuUGCGGCUAgGCCGUCa---AGC-CGUGa -5'
10706 3' -56.5 NC_002794.1 + 107522 0.72 0.640094
Target:  5'- cGACGCCGAcggCCGGCg---CGGCGCc -3'
miRNA:   3'- uUUGCGGCUa--GGCCGucaaGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 65173 0.72 0.640094
Target:  5'- uGGCGCCGAgaCCGGCGGgugcCGGCGa- -3'
miRNA:   3'- uUUGCGGCUa-GGCCGUCaa--GCCGUga -5'
10706 3' -56.5 NC_002794.1 + 181536 0.71 0.650214
Target:  5'- --cCGCCG--CCGGCGGgcCGGCGCUc -3'
miRNA:   3'- uuuGCGGCuaGGCCGUCaaGCCGUGA- -5'
10706 3' -56.5 NC_002794.1 + 180741 0.71 0.66032
Target:  5'- cGACGCCG-UCCGGCuccUCGGCGg- -3'
miRNA:   3'- uUUGCGGCuAGGCCGucaAGCCGUga -5'
10706 3' -56.5 NC_002794.1 + 93998 0.71 0.690472
Target:  5'- cGGACGCCGGcgCCGGCGGcgggcCGGCGg- -3'
miRNA:   3'- -UUUGCGGCUa-GGCCGUCaa---GCCGUga -5'
10706 3' -56.5 NC_002794.1 + 106980 0.71 0.690472
Target:  5'- cGGCgGCCGG-CaCGGCGGUggCGGCGCUg -3'
miRNA:   3'- uUUG-CGGCUaG-GCCGUCAa-GCCGUGA- -5'
10706 3' -56.5 NC_002794.1 + 17500 0.71 0.690472
Target:  5'- --uCGCCGAcgCCGGCcgAGaUCGGCGCc -3'
miRNA:   3'- uuuGCGGCUa-GGCCG--UCaAGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 37739 0.7 0.700439
Target:  5'- cGGCGCCG--CCGGCGG--CGGCGCg -3'
miRNA:   3'- uUUGCGGCuaGGCCGUCaaGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 116908 0.7 0.700439
Target:  5'- cGGCgGCCGGUCCGGCG--UCGGCu-- -3'
miRNA:   3'- uUUG-CGGCUAGGCCGUcaAGCCGuga -5'
10706 3' -56.5 NC_002794.1 + 112338 0.7 0.720195
Target:  5'- -cGCGCCGG-CCGGCGGcgcCGGCGg- -3'
miRNA:   3'- uuUGCGGCUaGGCCGUCaa-GCCGUga -5'
10706 3' -56.5 NC_002794.1 + 151838 0.7 0.729967
Target:  5'- cGACGCCG-UUCGGCGaggcGUucaUCGGCGCg -3'
miRNA:   3'- uUUGCGGCuAGGCCGU----CA---AGCCGUGa -5'
10706 3' -56.5 NC_002794.1 + 112250 0.7 0.739656
Target:  5'- cGAACGCCG--CCGGCGGgacCGGCGuCUc -3'
miRNA:   3'- -UUUGCGGCuaGGCCGUCaa-GCCGU-GA- -5'
10706 3' -56.5 NC_002794.1 + 12199 0.7 0.739656
Target:  5'- cGGGCGCCGcucggacgugCCGGCGGcgUCGGCGg- -3'
miRNA:   3'- -UUUGCGGCua--------GGCCGUCa-AGCCGUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.