miRNA display CGI


Results 21 - 40 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10706 5' -60.8 NC_002794.1 + 42667 0.7 0.510458
Target:  5'- gGCGCCGCCGGCa-CGGGGUacGCcGAGAc -3'
miRNA:   3'- -CGUGGCGGUCGgcGCCCUA--CGcCUUU- -5'
10706 5' -60.8 NC_002794.1 + 44291 0.66 0.723911
Target:  5'- cGCGcCCGCCGGgC-CGGcGAgGCGGGGAg -3'
miRNA:   3'- -CGU-GGCGGUCgGcGCC-CUaCGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 49014 0.68 0.636337
Target:  5'- cGCGCCGCggCGGCCGCGGcgucguccGgcGCGGu-- -3'
miRNA:   3'- -CGUGGCG--GUCGGCGCC--------CuaCGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 49395 0.68 0.646179
Target:  5'- cCGCCGCCgucggccacggcGGCCGCGGcGGcgGCGGc-- -3'
miRNA:   3'- cGUGGCGG------------UCGGCGCC-CUa-CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 49463 0.69 0.558052
Target:  5'- gGCGCCGCCGugaccggccGCCGCGGGucUGUcGAc- -3'
miRNA:   3'- -CGUGGCGGU---------CGGCGCCCu-ACGcCUuu -5'
10706 5' -60.8 NC_002794.1 + 52763 0.72 0.38004
Target:  5'- cGCGCCG-CGGCC-CGGGccGCGGGAu -3'
miRNA:   3'- -CGUGGCgGUCGGcGCCCuaCGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 53074 0.72 0.404332
Target:  5'- cGCGCCGCCAGCuCGCGGcac-CGGGc- -3'
miRNA:   3'- -CGUGGCGGUCG-GCGCCcuacGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 53757 0.71 0.473639
Target:  5'- cCGCCGCC-GCUGCcGGcgGCGGGAc -3'
miRNA:   3'- cGUGGCGGuCGGCGcCCuaCGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 55806 0.66 0.752076
Target:  5'- cGCAgCGCCGGgCGCGGGcgcGCGc--- -3'
miRNA:   3'- -CGUgGCGGUCgGCGCCCua-CGCcuuu -5'
10706 5' -60.8 NC_002794.1 + 58064 0.68 0.636337
Target:  5'- gGCcCCGgCGGCgGCGGGAcggGCGGc-- -3'
miRNA:   3'- -CGuGGCgGUCGgCGCCCUa--CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 58366 0.66 0.714365
Target:  5'- gGCGCCGCCcgacuuccaggaGGCgCGCGGGcgccagcUGCuGGAGc -3'
miRNA:   3'- -CGUGGCGG------------UCG-GCGCCCu------ACG-CCUUu -5'
10706 5' -60.8 NC_002794.1 + 58690 0.67 0.656012
Target:  5'- cUACCGCCAGCUGCucGGGcugGUGCGc--- -3'
miRNA:   3'- cGUGGCGGUCGGCG--CCC---UACGCcuuu -5'
10706 5' -60.8 NC_002794.1 + 65759 0.71 0.446044
Target:  5'- cGCGCCGCC-GCCGCccgugguGGGGccgaGCGGAu- -3'
miRNA:   3'- -CGUGGCGGuCGGCG-------CCCUa---CGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 66732 0.68 0.606818
Target:  5'- cCACCGCCGGCgGUGGcg-GCGGc-- -3'
miRNA:   3'- cGUGGCGGUCGgCGCCcuaCGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 66845 0.76 0.21668
Target:  5'- gGCGCCGCCgucggcgcggcgaGGCCGCGGcGUGCGGc-- -3'
miRNA:   3'- -CGUGGCGG-------------UCGGCGCCcUACGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 67562 0.66 0.733383
Target:  5'- cGCGCCGCaccaaAGCCGaCcGGucgGCGGAc- -3'
miRNA:   3'- -CGUGGCGg----UCGGC-GcCCua-CGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 69741 0.66 0.733383
Target:  5'- aGCGCCacgGCCGgcgacGCCGCGGGGaugGCGacGAAGa -3'
miRNA:   3'- -CGUGG---CGGU-----CGGCGCCCUa--CGC--CUUU- -5'
10706 5' -60.8 NC_002794.1 + 71299 0.67 0.685372
Target:  5'- -aGCCGCCGGCgCGCucGGGcgGCGa--- -3'
miRNA:   3'- cgUGGCGGUCG-GCG--CCCuaCGCcuuu -5'
10706 5' -60.8 NC_002794.1 + 72415 0.67 0.685372
Target:  5'- aCACCGCC-GCgGCGgaggaGGAgccgGCGGAGGg -3'
miRNA:   3'- cGUGGCGGuCGgCGC-----CCUa---CGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 77647 0.68 0.597005
Target:  5'- aCAUCGCCcaccugugcGGcCCGCGGGucUGCGGGGu -3'
miRNA:   3'- cGUGGCGG---------UC-GGCGCCCu-ACGCCUUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.