miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10706 5' -60.8 NC_002794.1 + 1557 0.71 0.455735
Target:  5'- gGCAcCCGCCGGCCuuauaCGGGGUcCGGggGc -3'
miRNA:   3'- -CGU-GGCGGUCGGc----GCCCUAcGCCuuU- -5'
10706 5' -60.8 NC_002794.1 + 1819 0.66 0.714365
Target:  5'- gGCAcCCGUCGGCCuuauaCGGGGUcCGGggGc -3'
miRNA:   3'- -CGU-GGCGGUCGGc----GCCCUAcGCCuuU- -5'
10706 5' -60.8 NC_002794.1 + 1892 0.71 0.455735
Target:  5'- gGCAcCCGCCGGCCuuauaCGGGGUcCGGggGc -3'
miRNA:   3'- -CGU-GGCGGUCGGc----GCCCUAcGCCuuU- -5'
10706 5' -60.8 NC_002794.1 + 1955 0.7 0.49189
Target:  5'- gGCGcCCGCCGGCCuuauaCGGGGUcCGGggGc -3'
miRNA:   3'- -CGU-GGCGGUCGGc----GCCCUAcGCCuuU- -5'
10706 5' -60.8 NC_002794.1 + 2017 0.7 0.49189
Target:  5'- gGCGcCCGCCGGCCuuauaCGGGGUcCGGggGc -3'
miRNA:   3'- -CGU-GGCGGUCGGc----GCCCUAcGCCuuU- -5'
10706 5' -60.8 NC_002794.1 + 2266 0.66 0.723911
Target:  5'- gGCgACCGCCGGCCcuuauaCGGGAgcCGGGGc -3'
miRNA:   3'- -CG-UGGCGGUCGGc-----GCCCUacGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 6592 0.69 0.538837
Target:  5'- cCGCCGCCAuGCuCGCGGGc--CGGAAc -3'
miRNA:   3'- cGUGGCGGU-CG-GCGCCCuacGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 12020 0.68 0.606818
Target:  5'- uGCGCCGCCGGCC-CGGGcguccGCGc--- -3'
miRNA:   3'- -CGUGGCGGUCGGcGCCCua---CGCcuuu -5'
10706 5' -60.8 NC_002794.1 + 12693 0.67 0.703791
Target:  5'- aGCGCCuguucauGUCGGCCGUGGGcUGCGc--- -3'
miRNA:   3'- -CGUGG-------CGGUCGGCGCCCuACGCcuuu -5'
10706 5' -60.8 NC_002794.1 + 17665 0.71 0.446921
Target:  5'- cCGCCGCCAccGCCGCcGGccccgGCGGAGAc -3'
miRNA:   3'- cGUGGCGGU--CGGCGcCCua---CGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 17842 0.67 0.664846
Target:  5'- uGCACCG--AGCCGCuccugacGGaGAUGCGGAc- -3'
miRNA:   3'- -CGUGGCggUCGGCG-------CC-CUACGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 20373 0.66 0.714365
Target:  5'- cCugCGCCGGaucgucgaCGCGGuGcgGCGGGAc -3'
miRNA:   3'- cGugGCGGUCg-------GCGCC-CuaCGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 21875 0.74 0.313232
Target:  5'- cGCGagGCCGGCCGCGGGGUguccGCGGc-- -3'
miRNA:   3'- -CGUggCGGUCGGCGCCCUA----CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 32311 0.67 0.685372
Target:  5'- gGC-CgCGCCGGCCGCGGc---CGGAGAc -3'
miRNA:   3'- -CGuG-GCGGUCGGCGCCcuacGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 32857 0.68 0.597005
Target:  5'- gGCAgCgGCCgAGCCgGCGGGcgGCGGc-- -3'
miRNA:   3'- -CGU-GgCGG-UCGG-CGCCCuaCGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 34489 0.68 0.636337
Target:  5'- uGCGCCGCCAGgUGaccaaccaGGGc-GCGGAGGa -3'
miRNA:   3'- -CGUGGCGGUCgGCg-------CCCuaCGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 34863 0.67 0.703791
Target:  5'- gGCGCCGCgGgcGCCGCGGacgccgcGAacGCGGAAc -3'
miRNA:   3'- -CGUGGCGgU--CGGCGCC-------CUa-CGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 34990 0.67 0.675616
Target:  5'- aCugCGCCGGCUGCGGGcc-CGGc-- -3'
miRNA:   3'- cGugGCGGUCGGCGCCCuacGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 36914 0.66 0.752076
Target:  5'- cGCGgCGCCGGCCcCGcGAccGCGGAGGa -3'
miRNA:   3'- -CGUgGCGGUCGGcGCcCUa-CGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 37740 0.79 0.147491
Target:  5'- gGCGCCGCCGGCgGCGGcGcgGCGGc-- -3'
miRNA:   3'- -CGUGGCGGUCGgCGCC-CuaCGCCuuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.