miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10706 5' -60.8 NC_002794.1 + 189773 1.07 0.001731
Target:  5'- uGCACCGCCAGCCGCGGGAUGCGGAAAu -3'
miRNA:   3'- -CGUGGCGGUCGGCGCCCUACGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 137566 0.8 0.136931
Target:  5'- cGCGCCGCCGucGCCGcCGGGGccggagUGCGGGGAg -3'
miRNA:   3'- -CGUGGCGGU--CGGC-GCCCU------ACGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 37740 0.79 0.147491
Target:  5'- gGCGCCGCCGGCgGCGGcGcgGCGGc-- -3'
miRNA:   3'- -CGUGGCGGUCGgCGCC-CuaCGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 151592 0.78 0.170862
Target:  5'- cGCGCCGCC-GCCGCGGGcccGCGGu-- -3'
miRNA:   3'- -CGUGGCGGuCGGCGCCCua-CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 130660 0.78 0.175066
Target:  5'- cCGCCGCCGGCCGCGGGcuccgccGCGGc-- -3'
miRNA:   3'- cGUGGCGGUCGGCGCCCua-----CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 66845 0.76 0.21668
Target:  5'- gGCGCCGCCgucggcgcggcgaGGCCGCGGcGUGCGGc-- -3'
miRNA:   3'- -CGUGGCGG-------------UCGGCGCCcUACGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 125847 0.76 0.227662
Target:  5'- uGCGCUGCCGGCUggacaaGCGGGccGUGUGGGAGa -3'
miRNA:   3'- -CGUGGCGGUCGG------CGCCC--UACGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 112348 0.76 0.244163
Target:  5'- gGCGgCGCCGGCgGCGGG--GCGGGGAg -3'
miRNA:   3'- -CGUgGCGGUCGgCGCCCuaCGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 146990 0.76 0.244163
Target:  5'- gGCGCCGCCGGCCGaCGucGGcgGCGGc-- -3'
miRNA:   3'- -CGUGGCGGUCGGC-GC--CCuaCGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 99559 0.75 0.267697
Target:  5'- cGCGCgCGCCcuCCGCGGGcgagggggGUGCGGAGGg -3'
miRNA:   3'- -CGUG-GCGGucGGCGCCC--------UACGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 133933 0.74 0.299649
Target:  5'- cGCGcCCGuCCAGuuGCGGGGUGacCGGAAc -3'
miRNA:   3'- -CGU-GGC-GGUCggCGCCCUAC--GCCUUu -5'
10706 5' -60.8 NC_002794.1 + 21875 0.74 0.313232
Target:  5'- cGCGagGCCGGCCGCGGGGUguccGCGGc-- -3'
miRNA:   3'- -CGUggCGGUCGGCGCCCUA----CGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 104546 0.74 0.327276
Target:  5'- aGCugCGCCAGCgucaGCuGGAUGCGGu-- -3'
miRNA:   3'- -CGugGCGGUCGg---CGcCCUACGCCuuu -5'
10706 5' -60.8 NC_002794.1 + 189039 0.73 0.334471
Target:  5'- -gACCGCCAGCgGCGGGcUGCGc--- -3'
miRNA:   3'- cgUGGCGGUCGgCGCCCuACGCcuuu -5'
10706 5' -60.8 NC_002794.1 + 111254 0.73 0.349206
Target:  5'- aGCACC-UCGGCCgGCaGGAUGCGGAc- -3'
miRNA:   3'- -CGUGGcGGUCGG-CGcCCUACGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 184043 0.73 0.364397
Target:  5'- cGCAgCGCgCGGUCGCGGGccGCGGcGAa -3'
miRNA:   3'- -CGUgGCG-GUCGGCGCCCuaCGCCuUU- -5'
10706 5' -60.8 NC_002794.1 + 140027 0.73 0.372163
Target:  5'- cCGCgGCCc-CCGCGGGcgGCGGGAGa -3'
miRNA:   3'- cGUGgCGGucGGCGCCCuaCGCCUUU- -5'
10706 5' -60.8 NC_002794.1 + 149684 0.73 0.372163
Target:  5'- cGCGCuCGaCUGGCCGCGGGGgccgccugGCGGGu- -3'
miRNA:   3'- -CGUG-GC-GGUCGGCGCCCUa-------CGCCUuu -5'
10706 5' -60.8 NC_002794.1 + 52763 0.72 0.38004
Target:  5'- cGCGCCG-CGGCC-CGGGccGCGGGAu -3'
miRNA:   3'- -CGUGGCgGUCGGcGCCCuaCGCCUUu -5'
10706 5' -60.8 NC_002794.1 + 101583 0.72 0.38004
Target:  5'- -gGCCGCCgcGGCCGgGGGG-GCGGGu- -3'
miRNA:   3'- cgUGGCGG--UCGGCgCCCUaCGCCUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.