miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10707 3' -49.9 NC_002794.1 + 57430 0.66 0.99948
Target:  5'- -uGGUCGGc-ACGGCGCCCGUCa--- -3'
miRNA:   3'- cuUUAGUUucUGCUGCGGGCAGagcc -5'
10707 3' -49.9 NC_002794.1 + 61861 0.68 0.996674
Target:  5'- ----cCAuGGACGACGCCgcgcgcCGUCgUCGGc -3'
miRNA:   3'- cuuuaGUuUCUGCUGCGG------GCAG-AGCC- -5'
10707 3' -49.9 NC_002794.1 + 62538 0.67 0.998596
Target:  5'- ----aCGAAGAgccCGACGCCCaUC-CGGa -3'
miRNA:   3'- cuuuaGUUUCU---GCUGCGGGcAGaGCC- -5'
10707 3' -49.9 NC_002794.1 + 62637 0.66 0.999358
Target:  5'- --cGUCGGAcccCGuCGCCCGcCUCGGc -3'
miRNA:   3'- cuuUAGUUUcu-GCuGCGGGCaGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 64781 0.74 0.888212
Target:  5'- ----aCGAAGACGACGCCgGUUccgCGGc -3'
miRNA:   3'- cuuuaGUUUCUGCUGCGGgCAGa--GCC- -5'
10707 3' -49.9 NC_002794.1 + 64894 0.72 0.96121
Target:  5'- aGGAAgaaGAAGACGACGaagagaCCGaCUCGGa -3'
miRNA:   3'- -CUUUag-UUUCUGCUGCg-----GGCaGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 65798 0.75 0.850949
Target:  5'- cGAGG-CGuuGACGACGUCCGUUUCGa -3'
miRNA:   3'- -CUUUaGUuuCUGCUGCGGGCAGAGCc -5'
10707 3' -49.9 NC_002794.1 + 67882 0.7 0.982929
Target:  5'- cGAAGcUCcGAG-CGGacucccccuCGCCCGUCUCGGc -3'
miRNA:   3'- -CUUU-AGuUUCuGCU---------GCGGGCAGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 68849 0.68 0.995455
Target:  5'- -cGGUCcccGACGAC-CCCGgagCUCGGg -3'
miRNA:   3'- cuUUAGuuuCUGCUGcGGGCa--GAGCC- -5'
10707 3' -49.9 NC_002794.1 + 70332 0.67 0.997989
Target:  5'- ----gCGAAGACGccgacggccggGCGCCCG-CUCGu -3'
miRNA:   3'- cuuuaGUUUCUGC-----------UGCGGGCaGAGCc -5'
10707 3' -49.9 NC_002794.1 + 73284 0.71 0.970869
Target:  5'- ----gCGgcGACG-CGCCCGgUCUCGGa -3'
miRNA:   3'- cuuuaGUuuCUGCuGCGGGC-AGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 83874 0.66 0.99904
Target:  5'- -cGGUCGGcgcGACGGC-CCCGggCUCGGc -3'
miRNA:   3'- cuUUAGUUu--CUGCUGcGGGCa-GAGCC- -5'
10707 3' -49.9 NC_002794.1 + 84149 0.66 0.999213
Target:  5'- ----aCGAGcgcGACGGCGCCuCcUCUCGGc -3'
miRNA:   3'- cuuuaGUUU---CUGCUGCGG-GcAGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 89926 0.67 0.998596
Target:  5'- ----cUAGAGGCGcggGCGCCgGcuUCUCGGg -3'
miRNA:   3'- cuuuaGUUUCUGC---UGCGGgC--AGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 101845 0.66 0.999021
Target:  5'- gGGAGUgCGAGGACGAgacgcgcCGCCUGcugCUCGa -3'
miRNA:   3'- -CUUUA-GUUUCUGCU-------GCGGGCa--GAGCc -5'
10707 3' -49.9 NC_002794.1 + 110003 0.71 0.970869
Target:  5'- ----aCGcAGACGGCGaaaaCUGUCUCGGa -3'
miRNA:   3'- cuuuaGUuUCUGCUGCg---GGCAGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 110209 0.67 0.997989
Target:  5'- aGggGUCGcucAgGACGUCCGUC-CGGa -3'
miRNA:   3'- -CuuUAGUuucUgCUGCGGGCAGaGCC- -5'
10707 3' -49.9 NC_002794.1 + 110343 0.71 0.970869
Target:  5'- gGggGUCuccgccguGGCGACGCCuCGUCgucgUCGGc -3'
miRNA:   3'- -CuuUAGuuu-----CUGCUGCGG-GCAG----AGCC- -5'
10707 3' -49.9 NC_002794.1 + 112665 0.69 0.989491
Target:  5'- ---cUCGcAGGCGGCGUUCGUCUCc- -3'
miRNA:   3'- cuuuAGUuUCUGCUGCGGGCAGAGcc -5'
10707 3' -49.9 NC_002794.1 + 115231 0.68 0.996104
Target:  5'- cGGAUCuggcucuuGACGACGuCCaCGUCgUCGGg -3'
miRNA:   3'- cUUUAGuuu-----CUGCUGC-GG-GCAG-AGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.