miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10707 3' -49.9 NC_002794.1 + 2070 0.67 0.998315
Target:  5'- gGAAGUCcGAGACGAcCGCCgGcCUuauaCGGc -3'
miRNA:   3'- -CUUUAGuUUCUGCU-GCGGgCaGA----GCC- -5'
10707 3' -49.9 NC_002794.1 + 8045 0.73 0.940569
Target:  5'- -----gGAAGACGcCGCaCCGUCUUGGc -3'
miRNA:   3'- cuuuagUUUCUGCuGCG-GGCAGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 10290 0.67 0.998596
Target:  5'- --cGUCucAGACGAC-CCCGUCggCGa -3'
miRNA:   3'- cuuUAGuuUCUGCUGcGGGCAGa-GCc -5'
10707 3' -49.9 NC_002794.1 + 10831 0.69 0.989491
Target:  5'- ---cUCcGAGACGGCGCCCuG-CUCGu -3'
miRNA:   3'- cuuuAGuUUCUGCUGCGGG-CaGAGCc -5'
10707 3' -49.9 NC_002794.1 + 13341 0.68 0.993894
Target:  5'- -cGGUCGGGGgugGCGGCGCCCcUCgccCGGg -3'
miRNA:   3'- cuUUAGUUUC---UGCUGCGGGcAGa--GCC- -5'
10707 3' -49.9 NC_002794.1 + 17251 0.67 0.998315
Target:  5'- ---uUCGAcGGCGGCGaCCCGgCUCGu -3'
miRNA:   3'- cuuuAGUUuCUGCUGC-GGGCaGAGCc -5'
10707 3' -49.9 NC_002794.1 + 22408 0.72 0.953657
Target:  5'- aAAGUCGGuAGACGAUGaCCCaGUgUCGGg -3'
miRNA:   3'- cUUUAGUU-UCUGCUGC-GGG-CAgAGCC- -5'
10707 3' -49.9 NC_002794.1 + 24373 0.66 0.99948
Target:  5'- ---uUCAGAGACGGgGCcCCGaggaccgagagaUCUCGa -3'
miRNA:   3'- cuuuAGUUUCUGCUgCG-GGC------------AGAGCc -5'
10707 3' -49.9 NC_002794.1 + 25938 0.66 0.99948
Target:  5'- ----aCGAcGACGACGUCCGUC-Ca- -3'
miRNA:   3'- cuuuaGUUuCUGCUGCGGGCAGaGcc -5'
10707 3' -49.9 NC_002794.1 + 38058 0.88 0.263182
Target:  5'- cGAcGUCGAGGAucuCGACGUCCGUCUCGGa -3'
miRNA:   3'- -CUuUAGUUUCU---GCUGCGGGCAGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 43700 0.7 0.980887
Target:  5'- gGAGAUCcAGGugGugAUGaCCGUCUCGGc -3'
miRNA:   3'- -CUUUAGuUUCugC--UGCgGGCAGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 44200 0.69 0.991928
Target:  5'- cGAAG-CcGGGcCGACGUCCGgCUCGGg -3'
miRNA:   3'- -CUUUaGuUUCuGCUGCGGGCaGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 44555 0.69 0.991928
Target:  5'- ----cCGgcGGCGGCGCCCGUUgacgucacgCGGg -3'
miRNA:   3'- cuuuaGUuuCUGCUGCGGGCAGa--------GCC- -5'
10707 3' -49.9 NC_002794.1 + 46312 0.68 0.995455
Target:  5'- cGAGcgCGgcGGCGACgGCgCCGUCgccgCGGa -3'
miRNA:   3'- -CUUuaGUuuCUGCUG-CG-GGCAGa---GCC- -5'
10707 3' -49.9 NC_002794.1 + 49562 0.72 0.957548
Target:  5'- aAAGUCGAGGACGaACGaCCgGUCgacCGGa -3'
miRNA:   3'- cUUUAGUUUCUGC-UGC-GGgCAGa--GCC- -5'
10707 3' -49.9 NC_002794.1 + 49857 0.66 0.99948
Target:  5'- ----gCGucGGCGGCGCCCGcCaccCGGa -3'
miRNA:   3'- cuuuaGUuuCUGCUGCGGGCaGa--GCC- -5'
10707 3' -49.9 NC_002794.1 + 50612 0.73 0.925304
Target:  5'- gGGGAUC-GAGACGAgcugcuUGCCCGUC-CGGc -3'
miRNA:   3'- -CUUUAGuUUCUGCU------GCGGGCAGaGCC- -5'
10707 3' -49.9 NC_002794.1 + 50770 0.7 0.980887
Target:  5'- ----gCGgcGGCGACGgCgCGUCUCGGg -3'
miRNA:   3'- cuuuaGUuuCUGCUGCgG-GCAGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 52892 0.66 0.999446
Target:  5'- uGggGUCGAAcGCGGCGCcgccgCCGUCgccgccgccgucgcUCGGc -3'
miRNA:   3'- -CuuUAGUUUcUGCUGCG-----GGCAG--------------AGCC- -5'
10707 3' -49.9 NC_002794.1 + 53219 0.66 0.998836
Target:  5'- --cGUCGAGcGGCGAaacgGUCCGUcCUCGGc -3'
miRNA:   3'- cuuUAGUUU-CUGCUg---CGGGCA-GAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.