miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10707 3' -49.9 NC_002794.1 + 188004 1.11 0.012966
Target:  5'- cGAAAUCAAAGACGACGCCCGUCUCGGc -3'
miRNA:   3'- -CUUUAGUUUCUGCUGCGGGCAGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 38058 0.88 0.263182
Target:  5'- cGAcGUCGAGGAucuCGACGUCCGUCUCGGa -3'
miRNA:   3'- -CUuUAGUUUCU---GCUGCGGGCAGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 180866 0.79 0.692579
Target:  5'- --cGUCGGAGGCGgcggauccggcGCGCCCGgUCUCGGc -3'
miRNA:   3'- cuuUAGUUUCUGC-----------UGCGGGC-AGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 181044 0.78 0.752557
Target:  5'- ---cUCcGAGACGAaGCUCGUCUCGGa -3'
miRNA:   3'- cuuuAGuUUCUGCUgCGGGCAGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 131154 0.76 0.842862
Target:  5'- -cGGUCGcacgccAGcACGGCGCCCGUCUCGa -3'
miRNA:   3'- cuUUAGUu-----UC-UGCUGCGGGCAGAGCc -5'
10707 3' -49.9 NC_002794.1 + 65798 0.75 0.850949
Target:  5'- cGAGG-CGuuGACGACGUCCGUUUCGa -3'
miRNA:   3'- -CUUUaGUuuCUGCUGCGGGCAGAGCc -5'
10707 3' -49.9 NC_002794.1 + 149848 0.75 0.858833
Target:  5'- cGAGGaCGGGGACGAggagcggcCGCCCG-CUCGGg -3'
miRNA:   3'- -CUUUaGUUUCUGCU--------GCGGGCaGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 118030 0.75 0.866507
Target:  5'- uAGAUCAgcuccagcaggcGAG-CGugGCCCGUCUCGcGg -3'
miRNA:   3'- cUUUAGU------------UUCuGCugCGGGCAGAGC-C- -5'
10707 3' -49.9 NC_002794.1 + 131563 0.75 0.873965
Target:  5'- -uGGUCGGc-GCGGCGCCCGUCUUGa -3'
miRNA:   3'- cuUUAGUUucUGCUGCGGGCAGAGCc -5'
10707 3' -49.9 NC_002794.1 + 64781 0.74 0.888212
Target:  5'- ----aCGAAGACGACGCCgGUUccgCGGc -3'
miRNA:   3'- cuuuaGUUUCUGCUGCGGgCAGa--GCC- -5'
10707 3' -49.9 NC_002794.1 + 50612 0.73 0.925304
Target:  5'- gGGGAUC-GAGACGAgcugcuUGCCCGUC-CGGc -3'
miRNA:   3'- -CUUUAGuUUCUGCU------GCGGGCAGaGCC- -5'
10707 3' -49.9 NC_002794.1 + 8045 0.73 0.940569
Target:  5'- -----gGAAGACGcCGCaCCGUCUUGGc -3'
miRNA:   3'- cuuuagUUUCUGCuGCG-GGCAGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 123825 0.72 0.949533
Target:  5'- ----gCAGGaGCGGCGCCCGUCgaucCGGa -3'
miRNA:   3'- cuuuaGUUUcUGCUGCGGGCAGa---GCC- -5'
10707 3' -49.9 NC_002794.1 + 179434 0.72 0.953657
Target:  5'- cGGGcgCGGAGGCGugGaccaCCGcCUCGGu -3'
miRNA:   3'- -CUUuaGUUUCUGCugCg---GGCaGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 22408 0.72 0.953657
Target:  5'- aAAGUCGGuAGACGAUGaCCCaGUgUCGGg -3'
miRNA:   3'- cUUUAGUU-UCUGCUGC-GGG-CAgAGCC- -5'
10707 3' -49.9 NC_002794.1 + 49562 0.72 0.957548
Target:  5'- aAAGUCGAGGACGaACGaCCgGUCgacCGGa -3'
miRNA:   3'- cUUUAGUUUCUGC-UGC-GGgCAGa--GCC- -5'
10707 3' -49.9 NC_002794.1 + 64894 0.72 0.96121
Target:  5'- aGGAAgaaGAAGACGACGaagagaCCGaCUCGGa -3'
miRNA:   3'- -CUUUag-UUUCUGCUGCg-----GGCaGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 127804 0.72 0.96121
Target:  5'- cGAGUCGAcGccgaGCGAgCGCCCGUCgUCGGc -3'
miRNA:   3'- cUUUAGUUuC----UGCU-GCGGGCAG-AGCC- -5'
10707 3' -49.9 NC_002794.1 + 73284 0.71 0.970869
Target:  5'- ----gCGgcGACG-CGCCCGgUCUCGGa -3'
miRNA:   3'- cuuuaGUuuCUGCuGCGGGC-AGAGCC- -5'
10707 3' -49.9 NC_002794.1 + 110003 0.71 0.970869
Target:  5'- ----aCGcAGACGGCGaaaaCUGUCUCGGa -3'
miRNA:   3'- cuuuaGUuUCUGCUGCg---GGCAGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.