miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10707 5' -58.3 NC_002794.1 + 63931 0.74 0.443549
Target:  5'- gCCCGG-C-CGGCGAGUCUCGAg--- -3'
miRNA:   3'- aGGGCCuGcGCCGCUCAGAGCUgaag -5'
10707 5' -58.3 NC_002794.1 + 64813 0.68 0.801576
Target:  5'- gCCgCGGACgGCGGCGAG-C-CGGCg-- -3'
miRNA:   3'- aGG-GCCUG-CGCCGCUCaGaGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 64843 0.67 0.82662
Target:  5'- -aCCGGacgGCGCGGCGGcacCUCGACg-- -3'
miRNA:   3'- agGGCC---UGCGCCGCUca-GAGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 66840 0.66 0.892301
Target:  5'- cUCCGGgcgccgccgucgGCGCGGCGAGgccgCGGCg-- -3'
miRNA:   3'- aGGGCC------------UGCGCCGCUCaga-GCUGaag -5'
10707 5' -58.3 NC_002794.1 + 70305 0.66 0.892301
Target:  5'- gCCCGGGCGCGaaGAG-C-CG-CUUCg -3'
miRNA:   3'- aGGGCCUGCGCcgCUCaGaGCuGAAG- -5'
10707 5' -58.3 NC_002794.1 + 71801 0.71 0.612491
Target:  5'- cCCCGGcggGCGCGGCGAGgccgcCUCGuCg-- -3'
miRNA:   3'- aGGGCC---UGCGCCGCUCa----GAGCuGaag -5'
10707 5' -58.3 NC_002794.1 + 78996 0.68 0.810075
Target:  5'- cUCCCGGAguCGCGGCGAcUCcaucccgcccUCGGCc-- -3'
miRNA:   3'- -AGGGCCU--GCGCCGCUcAG----------AGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 81179 0.66 0.885786
Target:  5'- aCCCGGACaGCGGCu-GUCUCu----- -3'
miRNA:   3'- aGGGCCUG-CGCCGcuCAGAGcugaag -5'
10707 5' -58.3 NC_002794.1 + 81978 0.68 0.77526
Target:  5'- uUCCCGGACGCG-CGAccGUUgcccgUCGACg-- -3'
miRNA:   3'- -AGGGCCUGCGCcGCU--CAG-----AGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 90581 0.68 0.766242
Target:  5'- gUCCCGGGCGCuccagucccGuCGGGcCUCGACggUCg -3'
miRNA:   3'- -AGGGCCUGCG---------CcGCUCaGAGCUGa-AG- -5'
10707 5' -58.3 NC_002794.1 + 92332 0.71 0.632133
Target:  5'- gCCCGGGCG-GGCG-G-CUCGGCgUCa -3'
miRNA:   3'- aGGGCCUGCgCCGCuCaGAGCUGaAG- -5'
10707 5' -58.3 NC_002794.1 + 93086 0.71 0.641957
Target:  5'- uUCCCGGGCuGCGGCcucuccuGcCUgGACUUCu -3'
miRNA:   3'- -AGGGCCUG-CGCCGcu-----CaGAgCUGAAG- -5'
10707 5' -58.3 NC_002794.1 + 96424 0.66 0.879065
Target:  5'- aUCUCGG-CGCGGCG---CUCGAUcUCa -3'
miRNA:   3'- -AGGGCCuGCGCCGCucaGAGCUGaAG- -5'
10707 5' -58.3 NC_002794.1 + 105203 0.69 0.719666
Target:  5'- aCUCGGACGCGGUGA-UCagggUCGACa-- -3'
miRNA:   3'- aGGGCCUGCGCCGCUcAG----AGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 107876 0.67 0.842514
Target:  5'- aUCgCGGaggcgGCGCGGCGGGUg-CGGCUg- -3'
miRNA:   3'- -AGgGCC-----UGCGCCGCUCAgaGCUGAag -5'
10707 5' -58.3 NC_002794.1 + 116378 0.66 0.865019
Target:  5'- -gUCGGugGCGuGCGGGUCgaaGACg-- -3'
miRNA:   3'- agGGCCugCGC-CGCUCAGag-CUGaag -5'
10707 5' -58.3 NC_002794.1 + 117291 0.67 0.818426
Target:  5'- gCgCGGACagcuGCGGCGuGUCgagCGACUg- -3'
miRNA:   3'- aGgGCCUG----CGCCGCuCAGa--GCUGAag -5'
10707 5' -58.3 NC_002794.1 + 119452 0.69 0.719666
Target:  5'- --gCGGugGCGGCGucgacUUCGACUUCu -3'
miRNA:   3'- aggGCCugCGCCGCuca--GAGCUGAAG- -5'
10707 5' -58.3 NC_002794.1 + 121507 0.66 0.864296
Target:  5'- gCCgGGGCGacgacguccgaacCGGCGGucGUCUCGACg-- -3'
miRNA:   3'- aGGgCCUGC-------------GCCGCU--CAGAGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 123766 0.66 0.879065
Target:  5'- uUCCCGGGCGUGGaCGccUC-CGugUUg -3'
miRNA:   3'- -AGGGCCUGCGCC-GCucAGaGCugAAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.