miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10707 5' -58.3 NC_002794.1 + 554 0.68 0.792935
Target:  5'- gCCCGGccucgGCGCGGCGguggcaGGUCUCG-UUUa -3'
miRNA:   3'- aGGGCC-----UGCGCCGC------UCAGAGCuGAAg -5'
10707 5' -58.3 NC_002794.1 + 4445 0.66 0.892301
Target:  5'- cUUCCGGccgauACGCGGCGAuugaucaaUCUCGAUUg- -3'
miRNA:   3'- -AGGGCC-----UGCGCCGCUc-------AGAGCUGAag -5'
10707 5' -58.3 NC_002794.1 + 15038 0.66 0.879065
Target:  5'- uUCCUGGugcuguucauCGCGGUcaucGGUCUCGGCcUCu -3'
miRNA:   3'- -AGGGCCu---------GCGCCGc---UCAGAGCUGaAG- -5'
10707 5' -58.3 NC_002794.1 + 22861 0.66 0.879065
Target:  5'- aUCCCGGACGUcccGGCc-GUCgCGcGCUUCc -3'
miRNA:   3'- -AGGGCCUGCG---CCGcuCAGaGC-UGAAG- -5'
10707 5' -58.3 NC_002794.1 + 23627 0.69 0.747884
Target:  5'- gCCCGGACGC-GCGGccCUCGACc-- -3'
miRNA:   3'- aGGGCCUGCGcCGCUcaGAGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 23714 0.67 0.834652
Target:  5'- gUCCCGaaccgcGCGCGGCGGGcC-CGACg-- -3'
miRNA:   3'- -AGGGCc-----UGCGCCGCUCaGaGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 23944 0.69 0.757114
Target:  5'- gCCCGGcCGCGGCGca-CUUGGCUcCg -3'
miRNA:   3'- aGGGCCuGCGCCGCucaGAGCUGAaG- -5'
10707 5' -58.3 NC_002794.1 + 26646 0.69 0.747884
Target:  5'- aCCCGGACgGCGGCcGGcUCgUCGGCg-- -3'
miRNA:   3'- aGGGCCUG-CGCCGcUC-AG-AGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 30080 0.67 0.842514
Target:  5'- gCCCGGucgacgaggcGCGCGGCcGGUCcCGACc-- -3'
miRNA:   3'- aGGGCC----------UGCGCCGcUCAGaGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 31526 0.72 0.554093
Target:  5'- cUCCGGuuGCGCGGCGAGcCcCGACgUCu -3'
miRNA:   3'- aGGGCC--UGCGCCGCUCaGaGCUGaAG- -5'
10707 5' -58.3 NC_002794.1 + 35646 0.68 0.801576
Target:  5'- aCCCGGgACG-GGCGcccGGUCUcCGACguggUCa -3'
miRNA:   3'- aGGGCC-UGCgCCGC---UCAGA-GCUGa---AG- -5'
10707 5' -58.3 NC_002794.1 + 38599 0.67 0.824994
Target:  5'- cUCCCGGACGagaggccggacgGGCGcGUCcCGACUc- -3'
miRNA:   3'- -AGGGCCUGCg-----------CCGCuCAGaGCUGAag -5'
10707 5' -58.3 NC_002794.1 + 44706 0.67 0.8502
Target:  5'- gCCCGGccgcgacCGCGGCGAcGUCggcCGGCg-- -3'
miRNA:   3'- aGGGCCu------GCGCCGCU-CAGa--GCUGaag -5'
10707 5' -58.3 NC_002794.1 + 49475 0.68 0.810075
Target:  5'- -aCCGGcCGCcGCGGGUCugUCGACcUCg -3'
miRNA:   3'- agGGCCuGCGcCGCUCAG--AGCUGaAG- -5'
10707 5' -58.3 NC_002794.1 + 50732 0.66 0.892301
Target:  5'- gCCCGGG-GCGGCc-GcCUCGACUcgcUCg -3'
miRNA:   3'- aGGGCCUgCGCCGcuCaGAGCUGA---AG- -5'
10707 5' -58.3 NC_002794.1 + 50764 0.74 0.470105
Target:  5'- cCCCGGGCgGCGGCGAcggcgcGUCUCgGGCggCg -3'
miRNA:   3'- aGGGCCUG-CGCCGCU------CAGAG-CUGaaG- -5'
10707 5' -58.3 NC_002794.1 + 53204 0.66 0.891659
Target:  5'- aCCCGGACucgucgucgucgaGCGGCGAaacgguccGUCcUCGGCc-- -3'
miRNA:   3'- aGGGCCUG-------------CGCCGCU--------CAG-AGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 53782 0.71 0.622309
Target:  5'- gCCCGcGACGCgcccGGCGGGuuUCUCGGCg-- -3'
miRNA:   3'- aGGGC-CUGCG----CCGCUC--AGAGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 53846 0.66 0.872141
Target:  5'- --aCGGGCGUcucGGCGGGguUCUCGACg-- -3'
miRNA:   3'- aggGCCUGCG---CCGCUC--AGAGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 61894 0.66 0.892301
Target:  5'- gCgCGGcgaGCGCGGCGAG-CgcagCGACgUCg -3'
miRNA:   3'- aGgGCC---UGCGCCGCUCaGa---GCUGaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.