miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10707 5' -58.3 NC_002794.1 + 188041 1.1 0.002204
Target:  5'- gUCCCGGACGCGGCGAGUCUCGACUUCg -3'
miRNA:   3'- -AGGGCCUGCGCCGCUCAGAGCUGAAG- -5'
10707 5' -58.3 NC_002794.1 + 63931 0.74 0.443549
Target:  5'- gCCCGG-C-CGGCGAGUCUCGAg--- -3'
miRNA:   3'- aGGGCCuGcGCCGCUCAGAGCUgaag -5'
10707 5' -58.3 NC_002794.1 + 50764 0.74 0.470105
Target:  5'- cCCCGGGCgGCGGCGAcggcgcGUCUCgGGCggCg -3'
miRNA:   3'- aGGGCCUG-CGCCGCU------CAGAG-CUGaaG- -5'
10707 5' -58.3 NC_002794.1 + 31526 0.72 0.554093
Target:  5'- cUCCGGuuGCGCGGCGAGcCcCGACgUCu -3'
miRNA:   3'- aGGGCC--UGCGCCGCUCaGaGCUGaAG- -5'
10707 5' -58.3 NC_002794.1 + 71801 0.71 0.612491
Target:  5'- cCCCGGcggGCGCGGCGAGgccgcCUCGuCg-- -3'
miRNA:   3'- aGGGCC---UGCGCCGCUCa----GAGCuGaag -5'
10707 5' -58.3 NC_002794.1 + 128334 0.71 0.612491
Target:  5'- gCCCGGACGCGGUggacuGAGcagUCGACUc- -3'
miRNA:   3'- aGGGCCUGCGCCG-----CUCag-AGCUGAag -5'
10707 5' -58.3 NC_002794.1 + 53782 0.71 0.622309
Target:  5'- gCCCGcGACGCgcccGGCGGGuuUCUCGGCg-- -3'
miRNA:   3'- aGGGC-CUGCG----CCGCUC--AGAGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 138437 0.71 0.622309
Target:  5'- gCCgCGGugGCGGCGGcGcCUCGGCc-- -3'
miRNA:   3'- aGG-GCCugCGCCGCU-CaGAGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 92332 0.71 0.632133
Target:  5'- gCCCGGGCG-GGCG-G-CUCGGCgUCa -3'
miRNA:   3'- aGGGCCUGCgCCGCuCaGAGCUGaAG- -5'
10707 5' -58.3 NC_002794.1 + 93086 0.71 0.641957
Target:  5'- uUCCCGGGCuGCGGCcucuccuGcCUgGACUUCu -3'
miRNA:   3'- -AGGGCCUG-CGCCGcu-----CaGAgCUGAAG- -5'
10707 5' -58.3 NC_002794.1 + 131558 0.7 0.671359
Target:  5'- gCCCGuggucGGCGCGGCGcccGUCUUGACg-- -3'
miRNA:   3'- aGGGC-----CUGCGCCGCu--CAGAGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 105203 0.69 0.719666
Target:  5'- aCUCGGACGCGGUGA-UCagggUCGACa-- -3'
miRNA:   3'- aGGGCCUGCGCCGCUcAG----AGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 119452 0.69 0.719666
Target:  5'- --gCGGugGCGGCGucgacUUCGACUUCu -3'
miRNA:   3'- aggGCCugCGCCGCuca--GAGCUGAAG- -5'
10707 5' -58.3 NC_002794.1 + 23627 0.69 0.747884
Target:  5'- gCCCGGACGC-GCGGccCUCGACc-- -3'
miRNA:   3'- aGGGCCUGCGcCGCUcaGAGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 26646 0.69 0.747884
Target:  5'- aCCCGGACgGCGGCcGGcUCgUCGGCg-- -3'
miRNA:   3'- aGGGCCUG-CGCCGcUC-AG-AGCUGaag -5'
10707 5' -58.3 NC_002794.1 + 180867 0.69 0.754356
Target:  5'- -gUCGGAgGCGGCGgauccggcgcgcccGGUCUCGGCcgCg -3'
miRNA:   3'- agGGCCUgCGCCGC--------------UCAGAGCUGaaG- -5'
10707 5' -58.3 NC_002794.1 + 23944 0.69 0.757114
Target:  5'- gCCCGGcCGCGGCGca-CUUGGCUcCg -3'
miRNA:   3'- aGGGCCuGCGCCGCucaGAGCUGAaG- -5'
10707 5' -58.3 NC_002794.1 + 90581 0.68 0.766242
Target:  5'- gUCCCGGGCGCuccagucccGuCGGGcCUCGACggUCg -3'
miRNA:   3'- -AGGGCCUGCG---------CcGCUCaGAGCUGa-AG- -5'
10707 5' -58.3 NC_002794.1 + 147771 0.68 0.766242
Target:  5'- aUCCUGagcGACGCGGCGAcccugggcGUCUCGgaGCUg- -3'
miRNA:   3'- -AGGGC---CUGCGCCGCU--------CAGAGC--UGAag -5'
10707 5' -58.3 NC_002794.1 + 146230 0.68 0.77526
Target:  5'- cUCCuCGGuCGCGGCGucgucaucGUCgUCGACcUCg -3'
miRNA:   3'- -AGG-GCCuGCGCCGCu-------CAG-AGCUGaAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.