miRNA display CGI


Results 41 - 60 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 3' -59.6 NC_002794.1 + 183206 0.66 0.817484
Target:  5'- cGCCGGCGgCgCGuuCGUCgCCAGCGa -3'
miRNA:   3'- -UGGUCGUgGgGCugGUAGaGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 66936 0.66 0.809145
Target:  5'- cGCCAcCGCCCCcgaGGCCcUCgaggCCGGCGa -3'
miRNA:   3'- -UGGUcGUGGGG---CUGGuAGa---GGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 119524 0.66 0.809145
Target:  5'- aGCCGGCcgcggACCCCucguccgcGGCCGUCgCCGGCc- -3'
miRNA:   3'- -UGGUCG-----UGGGG--------CUGGUAGaGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 12493 0.66 0.809145
Target:  5'- cACCuGCACguuCCCGAgCCGcUCgaCCGGCGGc -3'
miRNA:   3'- -UGGuCGUG---GGGCU-GGU-AGa-GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 49256 0.66 0.809145
Target:  5'- cCCGcGCACCCaCGACgGgcgCUCCAaCGGc -3'
miRNA:   3'- uGGU-CGUGGG-GCUGgUa--GAGGUcGCC- -5'
10708 3' -59.6 NC_002794.1 + 91568 0.66 0.809145
Target:  5'- aGCCGGCGCCgCUGAUgAacuaCUCCgAGUGGc -3'
miRNA:   3'- -UGGUCGUGG-GGCUGgUa---GAGG-UCGCC- -5'
10708 3' -59.6 NC_002794.1 + 82082 0.66 0.800659
Target:  5'- gGCCcucucgGGCACCCCGACCucGUCUgCC-GCc- -3'
miRNA:   3'- -UGG------UCGUGGGGCUGG--UAGA-GGuCGcc -5'
10708 3' -59.6 NC_002794.1 + 72239 0.66 0.800659
Target:  5'- gGCCGGCACgaUCCGccACCAUUgccccaguUCCGcGCGGa -3'
miRNA:   3'- -UGGUCGUG--GGGC--UGGUAG--------AGGU-CGCC- -5'
10708 3' -59.6 NC_002794.1 + 111568 0.66 0.800659
Target:  5'- cGCCAGCGCggucaCUacgguGGCCAgCUCgAGCGGg -3'
miRNA:   3'- -UGGUCGUGg----GG-----CUGGUaGAGgUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 62740 0.66 0.800659
Target:  5'- cCCGcCGCCCgCGGCCGUCucgcUCCGGCu- -3'
miRNA:   3'- uGGUcGUGGG-GCUGGUAG----AGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 1214 0.67 0.795501
Target:  5'- gAUCGGgGCCCCGGggcguguucuauaacCCGUCUCCgAGCc- -3'
miRNA:   3'- -UGGUCgUGGGGCU---------------GGUAGAGG-UCGcc -5'
10708 3' -59.6 NC_002794.1 + 112266 0.67 0.792034
Target:  5'- gACCGGCGucucguCCUCGGCCuccGUgUCgGGCGGc -3'
miRNA:   3'- -UGGUCGU------GGGGCUGG---UAgAGgUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 64318 0.67 0.792034
Target:  5'- cGCCAcCACCCCgGGCCGUUUuuGGCc- -3'
miRNA:   3'- -UGGUcGUGGGG-CUGGUAGAggUCGcc -5'
10708 3' -59.6 NC_002794.1 + 40832 0.67 0.792034
Target:  5'- gACCGguGCGCCugCCGACCucgcgCUCcCAGCGa -3'
miRNA:   3'- -UGGU--CGUGG--GGCUGGua---GAG-GUCGCc -5'
10708 3' -59.6 NC_002794.1 + 104275 0.67 0.792034
Target:  5'- gGCCGGCACCgugCCGAaCAggaUCUCgGGcCGGg -3'
miRNA:   3'- -UGGUCGUGG---GGCUgGU---AGAGgUC-GCC- -5'
10708 3' -59.6 NC_002794.1 + 85467 0.67 0.792034
Target:  5'- gGCCGGCG-CCCGGCC---UCCGGCc- -3'
miRNA:   3'- -UGGUCGUgGGGCUGGuagAGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 65364 0.67 0.792034
Target:  5'- cGCCGGCGCCCUGACgccacaCGGCGc -3'
miRNA:   3'- -UGGUCGUGGGGCUGguagagGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 131700 0.67 0.792034
Target:  5'- cCCAG-ACCCCGACCGgaccccgagagCgagCgAGCGGg -3'
miRNA:   3'- uGGUCgUGGGGCUGGUa----------Ga--GgUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 71171 0.67 0.78942
Target:  5'- cACCAGCACCCCccggcggaacaggaGAUCGa--CCAGCGc -3'
miRNA:   3'- -UGGUCGUGGGG--------------CUGGUagaGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 189399 0.67 0.783277
Target:  5'- gGCCAcGUAgUCCG-CCAgggCCAGCGGg -3'
miRNA:   3'- -UGGU-CGUgGGGCuGGUagaGGUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.