miRNA display CGI


Results 21 - 40 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 3' -59.6 NC_002794.1 + 22932 0.69 0.661038
Target:  5'- aACCGGCACCCaucggcuGGCCGaCgggCCGGCGc -3'
miRNA:   3'- -UGGUCGUGGGg------CUGGUaGa--GGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 23634 0.66 0.836855
Target:  5'- cGCgCGGC-CCUCGACCccCUCCgccccccgagcgaccGGCGGa -3'
miRNA:   3'- -UG-GUCGuGGGGCUGGuaGAGG---------------UCGCC- -5'
10708 3' -59.6 NC_002794.1 + 26639 0.66 0.833692
Target:  5'- uCCGcGCACCCggacggCGGCCggCUCguCGGCGGg -3'
miRNA:   3'- uGGU-CGUGGG------GCUGGuaGAG--GUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 34057 0.66 0.841548
Target:  5'- gGCCcGCGCacgaCCCG-CCGUUcccgCCGGCGGc -3'
miRNA:   3'- -UGGuCGUG----GGGCuGGUAGa---GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 34283 0.67 0.747085
Target:  5'- gGCCAGCGCCagCGACCGggagCUCUA-CGa -3'
miRNA:   3'- -UGGUCGUGGg-GCUGGUa---GAGGUcGCc -5'
10708 3' -59.6 NC_002794.1 + 35316 0.72 0.497481
Target:  5'- cGCCAGUucACCCUGugCGUgCUCCuguucGCGGu -3'
miRNA:   3'- -UGGUCG--UGGGGCugGUA-GAGGu----CGCC- -5'
10708 3' -59.6 NC_002794.1 + 35702 0.68 0.698868
Target:  5'- cCCGGCcuucuacAUCCCGAuCCAccuggcCUCCGGCGGc -3'
miRNA:   3'- uGGUCG-------UGGGGCU-GGUa-----GAGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 35772 0.71 0.553928
Target:  5'- -gCGGCACCgucgCCGGCguCGUCUCCGGCGu -3'
miRNA:   3'- ugGUCGUGG----GGCUG--GUAGAGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 36176 0.66 0.817484
Target:  5'- cACCcGCGCCCCgGGCCg---CCAGCa- -3'
miRNA:   3'- -UGGuCGUGGGG-CUGGuagaGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 36832 0.68 0.69019
Target:  5'- uCCAG-GCCCCgGACCGUCUCguagguguGCGGa -3'
miRNA:   3'- uGGUCgUGGGG-CUGGUAGAGgu------CGCC- -5'
10708 3' -59.6 NC_002794.1 + 38569 0.68 0.728403
Target:  5'- cGCCGGCGCCUcgacggaguCGGCCGcCUCCuccCGGa -3'
miRNA:   3'- -UGGUCGUGGG---------GCUGGUaGAGGuc-GCC- -5'
10708 3' -59.6 NC_002794.1 + 39708 0.72 0.497481
Target:  5'- cGCCGGCGCUaCCGACCG-CUgCAGCa- -3'
miRNA:   3'- -UGGUCGUGG-GGCUGGUaGAgGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 40832 0.67 0.792034
Target:  5'- gACCGguGCGCCugCCGACCucgcgCUCcCAGCGa -3'
miRNA:   3'- -UGGU--CGUGG--GGCUGGua---GAG-GUCGCc -5'
10708 3' -59.6 NC_002794.1 + 43401 0.67 0.747085
Target:  5'- uCCAGCAcCCCCGGgCAggUCCGGgaCGGc -3'
miRNA:   3'- uGGUCGU-GGGGCUgGUagAGGUC--GCC- -5'
10708 3' -59.6 NC_002794.1 + 43802 0.68 0.728403
Target:  5'- gACCcGcCGCUCCGGgcCCAggcUCUCCAGCGa -3'
miRNA:   3'- -UGGuC-GUGGGGCU--GGU---AGAGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 43862 0.7 0.596498
Target:  5'- gGCCcggGGCACguagacggugagauaCCCGGCCGUCgCCGGCGu -3'
miRNA:   3'- -UGG---UCGUG---------------GGGCUGGUAGaGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 44443 0.71 0.544369
Target:  5'- cACCGGCGCgCCCGcCCGgacgUCGGCGGc -3'
miRNA:   3'- -UGGUCGUG-GGGCuGGUaga-GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 44533 0.69 0.651268
Target:  5'- cGCgAGCGCgCCG-UCGUCgucgCCGGCGGc -3'
miRNA:   3'- -UGgUCGUGgGGCuGGUAGa---GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 47553 0.67 0.765398
Target:  5'- cACCAGCacgaGCUCCGACag-CUCCuGGCGc -3'
miRNA:   3'- -UGGUCG----UGGGGCUGguaGAGG-UCGCc -5'
10708 3' -59.6 NC_002794.1 + 48060 0.67 0.774395
Target:  5'- gGCaCGGCGCUgaUGGCCGg--CCAGCGGg -3'
miRNA:   3'- -UG-GUCGUGGg-GCUGGUagaGGUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.