miRNA display CGI


Results 1 - 20 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 3' -59.6 NC_002794.1 + 1214 0.67 0.795501
Target:  5'- gAUCGGgGCCCCGGggcguguucuauaacCCGUCUCCgAGCc- -3'
miRNA:   3'- -UGGUCgUGGGGCU---------------GGUAGAGG-UCGcc -5'
10708 3' -59.6 NC_002794.1 + 11319 0.72 0.47023
Target:  5'- gGCCAGCGCgagCCCGaacgagacgcagGCgAUCUCCGGCGu -3'
miRNA:   3'- -UGGUCGUG---GGGC------------UGgUAGAGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 11859 0.66 0.833692
Target:  5'- cGCCGGCGacgaccgcccgcCCCgCGACgGgucCUCgAGCGGg -3'
miRNA:   3'- -UGGUCGU------------GGG-GCUGgUa--GAGgUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 12493 0.66 0.809145
Target:  5'- cACCuGCACguuCCCGAgCCGcUCgaCCGGCGGc -3'
miRNA:   3'- -UGGuCGUG---GGGCU-GGU-AGa-GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 12913 0.68 0.699829
Target:  5'- gGCCgAGUACCgCCuGGCCGUCgacgacCUGGCGGa -3'
miRNA:   3'- -UGG-UCGUGG-GG-CUGGUAGa-----GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 13784 0.7 0.596498
Target:  5'- cCCGGgugGCUCCGGCCGUCUucgcgacgggcccggCCGGCGGc -3'
miRNA:   3'- uGGUCg--UGGGGCUGGUAGA---------------GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 13862 0.66 0.817484
Target:  5'- cGCCGcCGCCgCGACCcgguUCUCCgAGCGc -3'
miRNA:   3'- -UGGUcGUGGgGCUGGu---AGAGG-UCGCc -5'
10708 3' -59.6 NC_002794.1 + 14256 0.72 0.461316
Target:  5'- cGCCGGCucgACCCCGACCGaggUgUUCGGCuGGa -3'
miRNA:   3'- -UGGUCG---UGGGGCUGGU---AgAGGUCG-CC- -5'
10708 3' -59.6 NC_002794.1 + 14652 0.7 0.61212
Target:  5'- cGCCGGCGCCgcggcgucgguCCGACUcgCggCGGCGGu -3'
miRNA:   3'- -UGGUCGUGG-----------GGCUGGuaGagGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 16500 0.68 0.728403
Target:  5'- cGCCAcCGCCgCCG-CCGUCcCCGGCGu -3'
miRNA:   3'- -UGGUcGUGG-GGCuGGUAGaGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 16578 0.77 0.266303
Target:  5'- cGCCAcCACCgCCGccGCCGUCUCCGGCGu -3'
miRNA:   3'- -UGGUcGUGG-GGC--UGGUAGAGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 17669 0.67 0.774395
Target:  5'- cGCCAcCGCCgCCGGCC----CCGGCGGa -3'
miRNA:   3'- -UGGUcGUGG-GGCUGGuagaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 17932 0.69 0.641484
Target:  5'- gGCCGGCuCCCCGACCuggCggCCAcccGCGa -3'
miRNA:   3'- -UGGUCGuGGGGCUGGua-Ga-GGU---CGCc -5'
10708 3' -59.6 NC_002794.1 + 17979 0.69 0.670787
Target:  5'- aGCCuGGCGCCCaCGGCCg---CCGGCGa -3'
miRNA:   3'- -UGG-UCGUGGG-GCUGGuagaGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 18567 0.68 0.699829
Target:  5'- gACC-GUGCCCgCGACCGUCUCgAcGaCGGa -3'
miRNA:   3'- -UGGuCGUGGG-GCUGGUAGAGgU-C-GCC- -5'
10708 3' -59.6 NC_002794.1 + 18647 0.7 0.582879
Target:  5'- cGCCGGCACCCgggaCGACCGUCgCC-GCu- -3'
miRNA:   3'- -UGGUCGUGGG----GCUGGUAGaGGuCGcc -5'
10708 3' -59.6 NC_002794.1 + 18678 0.71 0.534863
Target:  5'- cUCGGCugCCgCcGCCGUCUCCGGCa- -3'
miRNA:   3'- uGGUCGugGG-GcUGGUAGAGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 19259 0.66 0.825669
Target:  5'- gACCGGCcgcgGCCCCcguGGCgCGUCUCCuGGCcuGGa -3'
miRNA:   3'- -UGGUCG----UGGGG---CUG-GUAGAGG-UCG--CC- -5'
10708 3' -59.6 NC_002794.1 + 20208 0.68 0.70846
Target:  5'- cGCC-GCACCgCCGACCGccauggcUCUCC-GCGc -3'
miRNA:   3'- -UGGuCGUGG-GGCUGGU-------AGAGGuCGCc -5'
10708 3' -59.6 NC_002794.1 + 21490 0.75 0.339653
Target:  5'- gGCUucggAGC-CUCCGACCGUCUCCGGCu- -3'
miRNA:   3'- -UGG----UCGuGGGGCUGGUAGAGGUCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.