miRNA display CGI


Results 1 - 20 of 185 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 3' -59.6 NC_002794.1 + 187202 1.09 0.001969
Target:  5'- gACCAGCACCCCGACCAUCUCCAGCGGc -3'
miRNA:   3'- -UGGUCGUGGGGCUGGUAGAGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 112565 0.78 0.23744
Target:  5'- cGCCGGC-CaCCCGGCCGcUCUCCAGCu- -3'
miRNA:   3'- -UGGUCGuG-GGGCUGGU-AGAGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 156403 0.77 0.248658
Target:  5'- gGCCGGCGCCgCGGCCG-CggccacggCCGGCGGg -3'
miRNA:   3'- -UGGUCGUGGgGCUGGUaGa-------GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 114198 0.77 0.25443
Target:  5'- -gCGGCGCCaCGGCCggcGUCUCCGGCGGc -3'
miRNA:   3'- ugGUCGUGGgGCUGG---UAGAGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 16578 0.77 0.266303
Target:  5'- cGCCAcCACCgCCGccGCCGUCUCCGGCGu -3'
miRNA:   3'- -UGGUcGUGG-GGC--UGGUAGAGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 109600 0.77 0.266303
Target:  5'- gACCAGCACCgugguuuccgaCCGACgAUCUCguGUGGa -3'
miRNA:   3'- -UGGUCGUGG-----------GGCUGgUAGAGguCGCC- -5'
10708 3' -59.6 NC_002794.1 + 53981 0.76 0.304608
Target:  5'- uCCGGCuGCCCCGcGCCAgcgUCUCCAGCa- -3'
miRNA:   3'- uGGUCG-UGGGGC-UGGU---AGAGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 64552 0.75 0.339653
Target:  5'- aACCAGCccguccACCUgGACCGcCUCCAGCGa -3'
miRNA:   3'- -UGGUCG------UGGGgCUGGUaGAGGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 21490 0.75 0.339653
Target:  5'- gGCUucggAGC-CUCCGACCGUCUCCGGCu- -3'
miRNA:   3'- -UGG----UCGuGGGGCUGGUAGAGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 119676 0.75 0.347003
Target:  5'- uCCGGCGuCCCCGG-CGUCUCCGGCu- -3'
miRNA:   3'- uGGUCGU-GGGGCUgGUAGAGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 68239 0.75 0.347003
Target:  5'- gACgCAGCGCCCCGACCuccccCUCCuGCa- -3'
miRNA:   3'- -UG-GUCGUGGGGCUGGua---GAGGuCGcc -5'
10708 3' -59.6 NC_002794.1 + 124139 0.74 0.385439
Target:  5'- uCCGGCGCCCgGgaGCgGUCUCC-GCGGg -3'
miRNA:   3'- uGGUCGUGGGgC--UGgUAGAGGuCGCC- -5'
10708 3' -59.6 NC_002794.1 + 150542 0.73 0.409813
Target:  5'- gGCCGGCGCCauGGCCGUCU-CGGCGc -3'
miRNA:   3'- -UGGUCGUGGggCUGGUAGAgGUCGCc -5'
10708 3' -59.6 NC_002794.1 + 113610 0.73 0.413135
Target:  5'- uCCAGCGCCgCGGCCAgguucagguugaacgUCUCgagCAGCGGc -3'
miRNA:   3'- uGGUCGUGGgGCUGGU---------------AGAG---GUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 195246 0.73 0.418148
Target:  5'- cACCAGCA--CCGACCAcC-CCGGCGGg -3'
miRNA:   3'- -UGGUCGUggGGCUGGUaGaGGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 182559 0.73 0.418148
Target:  5'- gGCCGGCACCgUcACCGggaUCUCCGuGCGGg -3'
miRNA:   3'- -UGGUCGUGGgGcUGGU---AGAGGU-CGCC- -5'
10708 3' -59.6 NC_002794.1 + 186119 0.73 0.426586
Target:  5'- cGCCGGguCCCCGG--AUCUCCAGCa- -3'
miRNA:   3'- -UGGUCguGGGGCUggUAGAGGUCGcc -5'
10708 3' -59.6 NC_002794.1 + 101471 0.73 0.426586
Target:  5'- cGCCGGCGCgCCCGcCCGaaacgCCGGCGGc -3'
miRNA:   3'- -UGGUCGUG-GGGCuGGUaga--GGUCGCC- -5'
10708 3' -59.6 NC_002794.1 + 14256 0.72 0.461316
Target:  5'- cGCCGGCucgACCCCGACCGaggUgUUCGGCuGGa -3'
miRNA:   3'- -UGGUCG---UGGGGCUGGU---AgAGGUCG-CC- -5'
10708 3' -59.6 NC_002794.1 + 11319 0.72 0.47023
Target:  5'- gGCCAGCGCgagCCCGaacgagacgcagGCgAUCUCCGGCGu -3'
miRNA:   3'- -UGGUCGUG---GGGC------------UGgUAGAGGUCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.