miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10708 5' -55.6 NC_002794.1 + 121748 0.67 0.91406
Target:  5'- cGGCgGCgAGaCGgAGAUGGCGGUgcccGAGGc -3'
miRNA:   3'- -CCGgCG-UC-GUgUCUAUCGCCGa---CUUC- -5'
10708 5' -55.6 NC_002794.1 + 100800 0.67 0.911708
Target:  5'- cGGCCGCuucuGCGCcuacgugccgGGCGGCgGggGc -3'
miRNA:   3'- -CCGGCGu---CGUGucua------UCGCCGaCuuC- -5'
10708 5' -55.6 NC_002794.1 + 122344 0.67 0.90689
Target:  5'- uGGCCGUccggAGCACcgAGGUcugcuacGGCGGCagcuaccUGAAGg -3'
miRNA:   3'- -CCGGCG----UCGUG--UCUA-------UCGCCG-------ACUUC- -5'
10708 5' -55.6 NC_002794.1 + 126243 0.67 0.901923
Target:  5'- uGGCgauCGUGGCGCGcGAggucGGCGGCUGGc- -3'
miRNA:   3'- -CCG---GCGUCGUGU-CUa---UCGCCGACUuc -5'
10708 5' -55.6 NC_002794.1 + 158533 0.67 0.901923
Target:  5'- -cCCGCAGCAgAGGacGCGGCcGAGa -3'
miRNA:   3'- ccGGCGUCGUgUCUauCGCCGaCUUc -5'
10708 5' -55.6 NC_002794.1 + 88079 0.67 0.901923
Target:  5'- gGGCCGCGGUuugaACGGGgcGUGGUgaUGAGc -3'
miRNA:   3'- -CCGGCGUCG----UGUCUauCGCCG--ACUUc -5'
10708 5' -55.6 NC_002794.1 + 70069 0.67 0.901923
Target:  5'- cGGCCGCAGcCGCAGcaaGGCGacgcaggccgcGCaGAAGa -3'
miRNA:   3'- -CCGGCGUC-GUGUCua-UCGC-----------CGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 194112 0.67 0.899385
Target:  5'- uGCUGCGGCACcgcgcgcaCGGCUGAGGc -3'
miRNA:   3'- cCGGCGUCGUGucuauc--GCCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 87202 0.67 0.888866
Target:  5'- gGGUgGgGGUGCAGGccgGGCGGgUGggGg -3'
miRNA:   3'- -CCGgCgUCGUGUCUa--UCGCCgACuuC- -5'
10708 5' -55.6 NC_002794.1 + 87160 0.67 0.888866
Target:  5'- gGGUgGgGGUGCAGGccgGGCGGgUGggGg -3'
miRNA:   3'- -CCGgCgUCGUGUCUa--UCGCCgACuuC- -5'
10708 5' -55.6 NC_002794.1 + 87118 0.67 0.888866
Target:  5'- gGGUgGgGGUGCAGGccgGGCGGgUGggGg -3'
miRNA:   3'- -CCGgCgUCGUGUCUa--UCGCCgACuuC- -5'
10708 5' -55.6 NC_002794.1 + 87244 0.67 0.888866
Target:  5'- gGGUgGgGGUGCAGGccgGGCGGgUGggGg -3'
miRNA:   3'- -CCGgCgUCGUGUCUa--UCGCCgACuuC- -5'
10708 5' -55.6 NC_002794.1 + 55949 0.67 0.888866
Target:  5'- uGCCGCAGCaggaACGGGUAGUaGUcGAGGu -3'
miRNA:   3'- cCGGCGUCG----UGUCUAUCGcCGaCUUC- -5'
10708 5' -55.6 NC_002794.1 + 76536 0.67 0.888866
Target:  5'- cGGCCGCGGCGCcGAc-GCGGUc---- -3'
miRNA:   3'- -CCGGCGUCGUGuCUauCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 185571 0.67 0.888866
Target:  5'- uGCCGCGGCAgGGcgcGCGGCUc--- -3'
miRNA:   3'- cCGGCGUCGUgUCuauCGCCGAcuuc -5'
10708 5' -55.6 NC_002794.1 + 138992 0.68 0.881999
Target:  5'- gGGCCuGC-GCGaAGGcuuuGCGGCUGAAGa -3'
miRNA:   3'- -CCGG-CGuCGUgUCUau--CGCCGACUUC- -5'
10708 5' -55.6 NC_002794.1 + 160004 0.68 0.881999
Target:  5'- cGCuCGCGguGCGCAGAUGGcCGGUgucGGAGu -3'
miRNA:   3'- cCG-GCGU--CGUGUCUAUC-GCCGa--CUUC- -5'
10708 5' -55.6 NC_002794.1 + 152588 0.68 0.881999
Target:  5'- cGGCCGCcacgucccugcGGCGCGGGcccaAGCGGCg---- -3'
miRNA:   3'- -CCGGCG-----------UCGUGUCUa---UCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 118369 0.68 0.881999
Target:  5'- aGGUCGCGGUAgAGAUacugccgcucGGCGGCg---- -3'
miRNA:   3'- -CCGGCGUCGUgUCUA----------UCGCCGacuuc -5'
10708 5' -55.6 NC_002794.1 + 100456 0.68 0.881999
Target:  5'- cGGCgGCGGCGCcuucccGGUGGCGGagaacCUGGAc -3'
miRNA:   3'- -CCGgCGUCGUGu-----CUAUCGCC-----GACUUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.